; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018807 (gene) of Chayote v1 genome

Gene IDSed0018807
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationLG13:18678828..18680689
RNA-Seq ExpressionSed0018807
SyntenySed0018807
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR014726 - Ribosomal protein L2, domain 3
IPR022669 - Ribosomal protein L2, C-terminal
IPR022671 - Ribosomal protein L2, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QCY72905.1 ribosomal protein L2 [Cucumis hystrix]3.3e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

WP_131792711.1 50S ribosomal protein L2 [Candidatus Frankia datiscae]3.3e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

YP_009687060.1 ribosomal protein L2 [Klainedoxa gabonensis]3.3e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

YP_010119775.1 ribosomal protein L2 [Hemsleya zhejiangensis]3.3e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

YP_010160873.1 ribosomal protein L2 [Baccaurea ramiflora]3.3e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

TrEMBL top hitse value%identityAlignment
A0A023T0V5 50S ribosomal protein L2, chloroplastic1.6e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

A0A191VX77 50S ribosomal protein L2, chloroplastic1.6e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

A0A218KG93 50S ribosomal protein L2, chloroplastic1.6e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

A0A5B8GX79 Ribosomal protein L21.6e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

A0A7G8QE64 Ribosomal protein L21.6e-3983.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

SwissProt top hitse value%identityAlignment
A4GYV2 50S ribosomal protein L2, chloroplastic9.7e-4282.24Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLG+G                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

A4QK59 50S ribosomal protein L2, chloroplastic1.3e-4182.24Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

Q14F95 50S ribosomal protein L2-A, chloroplastic9.7e-4282.24Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLG+G                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

Q14FB6 50S ribosomal protein L2-B, chloroplastic9.7e-4282.24Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLG+G                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

Q4VZK5 50S ribosomal protein L2, chloroplastic4.4e-4283.18Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLGKG                  KSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

Arabidopsis top hitse value%identityAlignment
AT2G44065.1 Ribosomal protein L2 family1.4e-1946.23Show/hide
Query:  MPLGTAIHNIEITLGKGT--IRKSAT--------------LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG
        M +GT IHNIE+  G+G   +R + T              +KLPSG+ + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHG
Subjt:  MPLGTAIHNIEITLGKGT--IRKSAT--------------LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG

Query:  GGEGRA
        GGEG++
Subjt:  GGEGRA

AT2G44065.2 Ribosomal protein L2 family1.4e-1946.23Show/hide
Query:  MPLGTAIHNIEITLGKGT--IRKSAT--------------LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG
        M +GT IHNIE+  G+G   +R + T              +KLPSG+ + I+  C AT+G V N     K L +AG   WLG RP VRGV MNP DHPHG
Subjt:  MPLGTAIHNIEITLGKGT--IRKSAT--------------LKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG

Query:  GGEGRA
        GGEG++
Subjt:  GGEGRA

AT3G51190.1 Ribosomal protein L2 family2.4e-1138.71Show/hide
Query:  LGTAIHNIEITLGKGTIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG
        L  A  +  I +       +  +KLPSG  +++   C A +GQV   G  +K L +AG+          CW    PVVRGV MNPV+HPHGGG
Subjt:  LGTAIHNIEITLGKGTIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG

ATCG00830.1 ribosomal protein L22.0e-4281.31Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLG+G                  KSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI

ATCG01310.1 ribosomal protein L22.0e-4281.31Show/hide
Query:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
        MPLGTAIHNIEITLG+G                  KSATLKLPSGEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG
Subjt:  MPLGTAIHNIEITLGKG---------------TIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGG

Query:  GEGRAPI
        GEGRAPI
Subjt:  GEGRAPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGACAATTAGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAA
AAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGTGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAG
TAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC
ATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAAAAAG
CTTCCTTGACCAATTGGGTAGATCAAGAAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC
ACTCTCGACCCATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGACAATTAGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAA
AAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGTGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAG
TAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC
ATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAAAAAG
CTTCCTTGACCAATTGGGTAGATCAAGAAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC
ACTCTCGACCCATGTAACATGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCATTCATCAACGGAAGCAGCTTCCCAAATTGGG
TAAAAGTGCAACCCGATAGCTGCAGAAGTAGGGATAATGGCACCAGAAATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTAC
TGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTA
TCCAGTTACAGAAACGACCCCATAGGCTTGCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTTATTTAATCATTAATAATCAGGG
Protein sequenceShow/hide protein sequence
MPLGTAIHNIEITLGKGTIRKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIDSFSVVSLIKLEVTKEPC
IALNREPPNTPATPNMWNGCIRMLCSAWNTIMKLKKSFLDQLGRSRKTAVAAATGAEYATAIQGRIPRRKLSSHSRPM