CuGenDBv2

Gene ID	Sed0018834
Organism	Sechium edule (Chayote v1)
Description	cytochrome c oxidase assembly factor 6
Genome location	LG12:33173806..33174650
RNA-Seq Expression	Sed0018834
Synteny	Sed0018834
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domains	IPR003213 - Cytochrome c oxidase, subunit VIb IPR036549 - Cytochrome c oxidase, subunit VIb superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008443871.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo]

1.5e-47

83.04

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG  DEVH+DVL ESRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA +V+LCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PLILPQPYTFKP
Subjt:  PLILPQPYTFKP

XP_022134674.1 uncharacterized protein LOC111006886 [Momordica charantia]

2.4e-48

83.33

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG +DEVHSDVL  SRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA+FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPS
        PL LPQPYTFKP S
Subjt:  PLILPQPYTFKPPS

XP_022973432.1 cytochrome c oxidase assembly factor 6 [Cucurbita maxima]

1.7e-46

79.82

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++ + SG  +EVH+DVL E RQACYKARD F+ CV K+SD+KPTEIASVGLLYPAEC+A RA+FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPS
        PL+LPQPYTFKP S
Subjt:  PLILPQPYTFKPPS

XP_023529846.1 cytochrome c oxidase assembly factor 6 [Cucurbita pepo subsp. pepo]

3.8e-46

79.82

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+  + SG  +EVH+DVL E RQACYKARD F+ CV K+SD+KPTEIASVGLLYPAEC+A RA+FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPS
        PL+LPQPYTFKP S
Subjt:  PLILPQPYTFKPPS

XP_038878579.1 uncharacterized protein LOC120070767 [Benincasa hispida]

2.8e-49

85.71

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG +DEVHSDVL ESRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PLILPQPYTFKP
Subjt:  PLILPQPYTFKP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTX1 Uncharacterized protein

1.8e-46

80.36

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA +A+ SG  DEVH+DVL ESRQACYKARD F+ C+ K+SD+KPTEIASVGL+YPAEC+ALRA + +LCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PLILPQPYTFKP
Subjt:  PLILPQPYTFKP

A0A1S3B9T5 uncharacterized protein LOC103487365 isoform X1

7.5e-48

83.04

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG  DEVH+DVL ESRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA +V+LCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PLILPQPYTFKP
Subjt:  PLILPQPYTFKP

A0A5A7SVN2 Cytochrome c oxidase assembly factor 6 isoform X3

7.5e-48

83.04

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG  DEVH+DVL ESRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA +V+LCRASWVKHFDRKFCQNSRVQRLLDDKD RRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        PLILPQPYTFKP
Subjt:  PLILPQPYTFKP

A0A6J1BZF0 uncharacterized protein LOC111006886

1.1e-48

83.33

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MAV+A+ SG +DEVHSDVL  SRQACYKARD F+ CV K+SD+KPTEIASVGL+YPAEC+ALRA+FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPS
        PL LPQPYTFKP S
Subjt:  PLILPQPYTFKPPS

A0A6J1I7I2 cytochrome c oxidase assembly factor 6

8.2e-47

79.82

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA++ + SG  +EVH+DVL E RQACYKARD F+ CV K+SD+KPTEIASVGLLYPAEC+A RA+FV+LCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKPPS
        PL+LPQPYTFKP S
Subjt:  PLILPQPYTFKPPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G58005.1 Cytochrome c oxidase, subunit Vib family protein

1.4e-38

62.5

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+    S   ++VH DVL+++R ACYKARD F+ C+ K+S +KPTEIA+VGLLYP EC   R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        P+ LPQPYTFKP
Subjt:  PLILPQPYTFKP

AT5G58005.2 Cytochrome c oxidase, subunit Vib family protein

1.4e-38

62.5

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Query:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG
        MA+    S   ++VH DVL+++R ACYKARD F+ C+ K+S +KPTEIA+VGLLYP EC   R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+G
Subjt:  MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRG

Query:  PLILPQPYTFKP
        P+ LPQPYTFKP
Subjt:  PLILPQPYTFKP

Sequences

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CDS sequence

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ATGGCTGTCAAAGCTGAAGAATCTGGAGCCATAGATGAAGTTCACAGCGACGTTCTAATTGAATCCAGACAAGCGTGCTACAAGGCTCGCGATGTTTTTTTCGATTGTGT
GACGAAGAAATCGGACGAAAAGCCGACTGAAATCGCTTCTGTTGGGCTTCTTTACCCTGCCGAGTGTAGAGCCTTGAGGGCCAAGTTTGTCGAACTTTGTAGGGCTTCTT
GGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAAAGACTTTTAGATGATAAAGATTCGAGGAGAGGTCCTTTGATACTTCCCCAGCCTTACACTTTC
AAGCCTCCTAGTTGA

mRNA sequence

Show/hide mRNA sequence

CGACGAAATACCCCAAAGCAGCTCCGTGTCTGTTCAACAATGGCTGTCAAAGCTGAAGAATCTGGAGCCATAGATGAAGTTCACAGCGACGTTCTAATTGAATCCAGACA
AGCGTGCTACAAGGCTCGCGATGTTTTTTTCGATTGTGTGACGAAGAAATCGGACGAAAAGCCGACTGAAATCGCTTCTGTTGGGCTTCTTTACCCTGCCGAGTGTAGAG
CCTTGAGGGCCAAGTTTGTCGAACTTTGTAGGGCTTCTTGGGTGAAGCATTTTGATAGGAAGTTTTGTCAGAATAGTAGGGTTCAAAGACTTTTAGATGATAAAGATTCG
AGGAGAGGTCCTTTGATACTTCCCCAGCCTTACACTTTCAAGCCTCCTAGTTGAACTACTTTGGGCTGCTAGAGTTTCATGGCTATTGGTATTTTGTTTAATTTTGTTTT
CGTTTCGTTTGTATAGGGATATAGAGATGATTCGTGGTATTAGATTTCATAATAATGTCAATCTTCTTACCAAGTTACAAAAACCTATTCCTTCCCTTTTTTATATGTGT
AAAGTACGGTATGGTATAGTATGGTATGATAGTTCTAATCAGTATGACCTTGATTTCAGATTTCAATTTATGATCATTTAC

Protein sequence

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MAVKAEESGAIDEVHSDVLIESRQACYKARDVFFDCVTKKSDEKPTEIASVGLLYPAECRALRAKFVELCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTF
KPPS

Sed0018834 (gene) of Chayote v1 genome