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Sed0018844 (gene) of Chayote v1 genome

Gene IDSed0018844
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG07:28476993..28480863
RNA-Seq ExpressionSed0018844
SyntenySed0018844
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2652.71Show/hide
Query:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHN------------------DQTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVI
        M IIVIFG  L I+V ++FF+LC+YICFQC+N                    T+  +  VD  E NR  Q+A+EKLTKPS +YDYEK+ E+ S L++C I
Subjt:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHN------------------DQTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVI

Query:  CLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        CLEEF +   CRVFPNCKHMFHTHCI  W
Subjt:  CLEEFRDRVSCRVFPNCKHMFHTHCIKSW

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]5.8e-2754.96Show/hide
Query:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHND------------------QTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTEC
        MPIIV+FGF+LT++V  SFFSLCIYICFQCH                    +   R   V+ EE N QT   +EKLT P VDY  ++N  E + SEL EC
Subjt:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHND------------------QTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTEC

Query:  VICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
         ICLE F +RVSCRVFPNCKHMFHTHCI  W
Subjt:  VICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]5.8e-2754.96Show/hide
Query:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHND------------------QTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTEC
        MPIIV+FGF+LT++V  SFFSLCIYICFQCH                    +   R   V+ EE N QT   +EKLT P VDY  ++N  E + SEL EC
Subjt:  MPIIVIFGFLLTIIVFISFFSLCIYICFQCHND------------------QTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTEC

Query:  VICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
         ICLE F +RVSCRVFPNCKHMFHTHCI  W
Subjt:  VICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]1.2e-2169.23Show/hide
Query:  TQMRTTMV-DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        T + TTMV D EE NRQ QMA+EKLTKPS  Y+ E+N+ESPS L+EC ICLE+  +RVSCRVFPNCKH+FHTHCI +W
Subjt:  TQMRTTMV-DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]7.8e-1661.84Show/hide
Query:  RTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        R   V+ EE N Q   A+EKLT P VDY  ++N  E + SEL EC ICLE F +RVSCRVFPNCKHMFHTHCI  W
Subjt:  RTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKN--EESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein7.4e-2071.21Show/hide
Query:  EHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        E NRQ QMA+EKLTKPS  Y+ E+N+ESPS L+EC ICLE+  +RVSCRVFPNCKH+FHTHCI +W
Subjt:  EHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

A0A2N9H006 RING-type domain-containing protein2.2e-0842.53Show/hide
Query:  DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP--RIYVM
        D+EE   + ++   +L  P ++Y   KN ++ S L +C ICLE+F D  SCRVF  CKH+FH  C+  W   LR N   P  R YVM
Subjt:  DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP--RIYVM

A0A5J5UAI3 RING-type E3 ubiquitin transferase5.0e-0856Show/hide
Query:  YEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLR
        YE+ E+  S+ +ECVICLEEFR    CRV PNCKH +H HCI  W +  R
Subjt:  YEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLR

A0A6J1AZ47 RING-H2 finger protein ATL56-like2.5e-0744.59Show/hide
Query:  MVDLEEHNRQTQMALEKLTK-PSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYL
        +V +  +NR  +M+ E L K PS DY   K  E  S   +CV+CLE FR    C++ PNC+H FH  CI SW L
Subjt:  MVDLEEHNRQTQMALEKLTK-PSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYL

A0A7N2R922 RING-type domain-containing protein1.9e-0749.28Show/hide
Query:  DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        D+E   RQ Q ALEKL  P V+Y    ++E  S    CVICLEEF +  SC+VF  C H+FH++CI  W
Subjt:  DLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

SwissProt top hitse value%identityAlignment
Q84W40 RING-H2 finger protein ATL115.5e-0431.58Show/hide
Query:  MPIIVIFGFLLTIIVFISFFSLCIYICFQ--------CHNDQTQMRTTMVDLEEHNRQTQMALEKL---TKPSVDYDYEKNEESPSELTECVICLEEFRD
        M I++I   L+++  F+ FFS+ I  C +          ND      T       NRQ    L+     T P+  Y   K      E  EC +CL EF D
Subjt:  MPIIVIFGFLLTIIVFISFFSLCIYICFQ--------CHNDQTQMRTTMVDLEEHNRQTQMALEKL---TKPSVDYDYEKNEESPSELTECVICLEEFRD

Query:  RVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP
          + R+ P C H+FH  CI +W   LR +T  P
Subjt:  RVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP

Q8LF65 RING-H2 finger protein ATL171.8e-0761.11Show/hide
Query:  ECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLS
        EC +CL EF+D  S RV PNCKH FH HCI  W+ S
Subjt:  ECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLS

Q8LGA5 E3 ubiquitin-protein ligase ATL319.0e-0735Show/hide
Query:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELL
        T P+  Y   K ++      EC ICL EF D  + R+ P C H+FH HCI +W   L+G+   P     L      PE++
Subjt:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELL

Q8RXX9 E3 ubiquitin-protein ligase ATL61.0e-0541.51Show/hide
Query:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        T P+  Y   K ++      EC ICL EF D  + R+ P C H+FH HCI +W
Subjt:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

Q9SRQ8 RING-H2 finger protein ATL512.0e-0630.93Show/hide
Query:  EKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELLGTKYPNQRCSFSTG
        E L K    Y Y K  +   E ++C +CL EF++  S R+ P C H FH  CI +W L    N  + R +++  +     +L   +   +  S STG
Subjt:  EKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELLGTKYPNQRCSFSTG

Arabidopsis top hitse value%identityAlignment
AT1G72200.1 RING/U-box superfamily protein3.9e-0531.58Show/hide
Query:  MPIIVIFGFLLTIIVFISFFSLCIYICFQ--------CHNDQTQMRTTMVDLEEHNRQTQMALEKL---TKPSVDYDYEKNEESPSELTECVICLEEFRD
        M I++I   L+++  F+ FFS+ I  C +          ND      T       NRQ    L+     T P+  Y   K      E  EC +CL EF D
Subjt:  MPIIVIFGFLLTIIVFISFFSLCIYICFQ--------CHNDQTQMRTTMVDLEEHNRQTQMALEKL---TKPSVDYDYEKNEESPSELTECVICLEEFRD

Query:  RVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP
          + R+ P C H+FH  CI +W   LR +T  P
Subjt:  RVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIP

AT3G03550.1 RING/U-box superfamily protein1.4e-0730.93Show/hide
Query:  EKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELLGTKYPNQRCSFSTG
        E L K    Y Y K  +   E ++C +CL EF++  S R+ P C H FH  CI +W L    N  + R +++  +     +L   +   +  S STG
Subjt:  EKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELLGTKYPNQRCSFSTG

AT3G05200.1 RING/U-box superfamily protein7.1e-0741.51Show/hide
Query:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW
        T P+  Y   K ++      EC ICL EF D  + R+ P C H+FH HCI +W
Subjt:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSW

AT4G15975.1 RING/U-box superfamily protein1.4e-0758.33Show/hide
Query:  ECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLS
        EC +CL EF+D  S RV PNCKH FH  CI  W+ S
Subjt:  ECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLS

AT5G27420.1 carbon/nitrogen insensitive 16.4e-0835Show/hide
Query:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELL
        T P+  Y   K ++      EC ICL EF D  + R+ P C H+FH HCI +W   L+G+   P     L      PE++
Subjt:  TKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKSWYLSLRGNTLIPRIYVMLRTLYSRPELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTATTCATTTCCTTCTTCAGCTTGTGCATCTACATTTGTTTCCAATGCCATAATGATCAAACGCAGAT
GAGGACGACGATGGTAGATCTCGAAGAGCATAATCGCCAGACTCAAATGGCGTTGGAGAAATTGACGAAGCCATCGGTCGACTATGATTATGAGAAAAATGAAGAATCAC
CATCGGAGTTGACCGAATGTGTCATATGTTTGGAGGAGTTCAGGGATAGAGTTTCGTGTCGAGTATTCCCCAATTGCAAGCATATGTTTCATACACATTGTATAAAGAGT
TGGTATCTGTCACTCAGGGGGAATACACTGATCCCTAGAATATACGTTATGCTTCGCACACTTTACTCCCGACCTGAGCTACTGGGGACAAAGTACCCAAATCAAAGGTG
CAGTTTTAGCACAGGTTGTAGAGCAGCTCGCAATGCAGAGAGAGGACTGCCCCTGCAGCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTATTCATTTCCTTCTTCAGCTTGTGCATCTACATTTGTTTCCAATGCCATAATGATCAAACGCAGAT
GAGGACGACGATGGTAGATCTCGAAGAGCATAATCGCCAGACTCAAATGGCGTTGGAGAAATTGACGAAGCCATCGGTCGACTATGATTATGAGAAAAATGAAGAATCAC
CATCGGAGTTGACCGAATGTGTCATATGTTTGGAGGAGTTCAGGGATAGAGTTTCGTGTCGAGTATTCCCCAATTGCAAGCATATGTTTCATACACATTGTATAAAGAGT
TGGTATCTGTCACTCAGGGGGAATACACTGATCCCTAGAATATACGTTATGCTTCGCACACTTTACTCCCGACCTGAGCTACTGGGGACAAAGTACCCAAATCAAAGGTG
CAGTTTTAGCACAGGTTGTAGAGCAGCTCGCAATGCAGAGAGAGGACTGCCCCTGCAGCCCTAG
Protein sequenceShow/hide protein sequence
MPIIVIFGFLLTIIVFISFFSLCIYICFQCHNDQTQMRTTMVDLEEHNRQTQMALEKLTKPSVDYDYEKNEESPSELTECVICLEEFRDRVSCRVFPNCKHMFHTHCIKS
WYLSLRGNTLIPRIYVMLRTLYSRPELLGTKYPNQRCSFSTGCRAARNAERGLPLQP