; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0018871 (gene) of Chayote v1 genome

Gene IDSed0018871
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23-like
Genome locationLG03:16747603..16747791
RNA-Seq ExpressionSed0018871
SyntenySed0018871
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]1.7e-0867.74Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        MEMK  A AAFI V ASL MVLAS+EAA+PAPGPSS  S  LP VG  +GA+A +LIAY LQ
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]2.5e-0769.64Show/hide
Query:  AVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        A AAFI V+ASL MVLAS+EAA+PAPGPSS+AS  LP VG  +GA+A +LIAY LQ
Subjt:  AVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

KCW90250.1 hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]2.0e-0453.23Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        M+MKK++  A +V +AS+  VLAS+++ APAPGPSS AS  LP  G+ VGA+  +  AYYLQ
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]6.7e-0557.38Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        ME+KK++ A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL

PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]3.0e-0557.38Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        ME+KK+++A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)9.5e-0553.23Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        M+MKK++  A +V +AS+  VLAS+++ APAPGPSS AS  LP  G+ VGA+  +  AYYLQ
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

A0A200QP69 Uncharacterized protein9.5e-0546.77Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        M+MKK++ A  I V+AS++  LA++EA APAPGP+S+A   +P +G+ VGA+  +  A+Y+Q
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

A0A2P5CAP7 Uncharacterized protein3.2e-0557.38Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        ME+KK++ A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL

A0A2P5F1L3 Uncharacterized protein1.5e-0557.38Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        ME+KK+++A  IV +ASL  V+A+NE  APAPGPSS AS  LP VG+ VGA+  +  AYYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL

A0A5D3E271 Arabinogalactan peptide 23-like8.3e-0967.74Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ
        MEMK  A AAFI V ASL MVLAS+EAA+PAPGPSS  S  LP VG  +GA+A +LIAY LQ
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 233.7e-0649.18Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+AS  LP +G+ VGA+  +L +YYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)4.2e-0548.39Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSS-ASIILPGVGAFVGAAATTLIAYYL
        MEMKK+A    +  +AS+  V+A+ E  APAPGP++S AS+ +P +G+ VGA+  +L AYYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSS-ASIILPGVGAFVGAAATTLIAYYL

AT3G57690.1 arabinogalactan protein 232.6e-0749.18Show/hide
Query:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL
        MEMKK+A    +  +AS+  V+A+ E  APAPGP+S+AS  LP +G+ VGA+  +L +YYL
Subjt:  MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAG
CGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTAGCCGTTGCTGCCTTCATTGTTGTTTCAGCCTCTCTGGACATGGTTTTGGCCTCCAATGAAGCGGCAGCGCCTGCACCCGGCCCGTCAAGCAG
CGCCTCCATTATCTTGCCCGGCGTCGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTGCATACTACCTTCAGTAA
Protein sequenceShow/hide protein sequence
MEMKKLAVAAFIVVSASLDMVLASNEAAAPAPGPSSSASIILPGVGAFVGAAATTLIAYYLQ