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Sed0018892 (gene) of Chayote v1 genome

Gene IDSed0018892
OrganismSechium edule (Chayote v1)
Descriptionribosomal protein L23AB
Genome locationLG14:12771529..12772538
RNA-Seq ExpressionSed0018892
SyntenySed0018892
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RID65195.1 hypothetical protein BRARA_D00411, partial [Brassica rapa]1.8e-0457.14Show/hide
Query:  KSRLVQLRTRI----RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        K +  ++RT+I    R+S  P N  D  G  ILKYPLT ESAMKKI+DNNTL FIV
Subjt:  KSRLVQLRTRI----RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

XP_004149813.1 60S ribosomal protein L23a [Cucumis sativus]4.0e-0468.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

XP_008463516.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo]4.0e-0468.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

XP_038890217.1 60S ribosomal protein L23a [Benincasa hispida]1.4e-0468.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P+N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

XP_039043537.1 60S ribosomal protein L23a-like [Hibiscus syriacus]3.1e-0466.67Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIVALDVLGVANKI
        P +KLGH QILK+PLT E+AMKKI+DNNTL FIV  D+L    KI
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIVALDVLGVANKI

TrEMBL top hitse value%identityAlignment
A0A2U1M058 60S ribosomal protein L23a1.9e-0470.73Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        RVS  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

A0A397ZIE5 Uncharacterized protein (Fragment)8.7e-0557.14Show/hide
Query:  KSRLVQLRTRI----RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        K +  ++RT+I    R+S  P N  D  G  ILKYPLT ESAMKKI+DNNTL FIV
Subjt:  KSRLVQLRTRI----RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

A0A5A7U4W7 50S ribosomal protein L23, chloroplastic1.9e-0468.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

B9SYP0 50S ribosomal protein L23, chloroplastic1.9e-0467.44Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIVAL
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV L
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIVAL

B9T152 50S ribosomal protein L23, chloroplastic1.9e-0467.44Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIVAL
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV L
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIVAL

SwissProt top hitse value%identityAlignment
O22644 60S ribosomal protein L23A1.2e-0668.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P N  D   +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

Q07761 60S ribosomal protein L23a1.3e-0565.85Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S    N  D+ G  ILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

Q8LD46 60S ribosomal protein L23a-12.0e-0679.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

Q9AT35 60S ribosomal protein L23a6.8e-0768.29Show/hide
Query:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
        R+S  P N  D+  +QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  RVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV

Q9M3C3 60S ribosomal protein L23a-22.0e-0679.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

Arabidopsis top hitse value%identityAlignment
AT2G39460.1 ribosomal protein L23AA1.4e-0779.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

AT2G39460.2 ribosomal protein L23AA1.4e-0779.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

AT3G55280.1 ribosomal protein L23AB1.4e-0779.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

AT3G55280.2 ribosomal protein L23AB1.4e-0779.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV

AT3G55280.3 ribosomal protein L23AB1.4e-0779.41Show/hide
Query:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV
        P +KL H QILKYPLT ESAMKKI+DNNTL FIV
Subjt:  PTDKLGH-QILKYPLTIESAMKKIDDNNTLAFIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGGATGGAATCATGCTATATAATTAGGAGAAGAGTGAAAATCCTCAATAGATTTTCCAATTTTTTTTTATTTAAATCCTCTCGATTAAGTAAATACACTTCCCT
TTTGAATGGTTTGTTGAATATTTTCTATGTATGGATTCTGACTGAACTTCAAGGATTGCCAAGGAAGTCAAGGCTGGTCCAATTAAGGACAAGAATCCGAGTATCCTACG
ATCCGTACAACCCCACGGACAAGTTGGGCCATCAGATTCTGAAATATCCACTGACCATAGAGTCTGCAATGAAGAAAATTGACGATAATAACACCCTTGCTTTTATTGTG
GCACTTGATGTCTTAGGTGTGGCAAATAAGATTGGTTATCATCTAAGCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGGATGGAATCATGCTATATAATTAGGAGAAGAGTGAAAATCCTCAATAGATTTTCCAATTTTTTTTTATTTAAATCCTCTCGATTAAGTAAATACACTTCCCT
TTTGAATGGTTTGTTGAATATTTTCTATGTATGGATTCTGACTGAACTTCAAGGATTGCCAAGGAAGTCAAGGCTGGTCCAATTAAGGACAAGAATCCGAGTATCCTACG
ATCCGTACAACCCCACGGACAAGTTGGGCCATCAGATTCTGAAATATCCACTGACCATAGAGTCTGCAATGAAGAAAATTGACGATAATAACACCCTTGCTTTTATTGTG
GCACTTGATGTCTTAGGTGTGGCAAATAAGATTGGTTATCATCTAAGCCTTTAA
Protein sequenceShow/hide protein sequence
MDGMESCYIIRRRVKILNRFSNFFLFKSSRLSKYTSLLNGLLNIFYVWILTELQGLPRKSRLVQLRTRIRVSYDPYNPTDKLGHQILKYPLTIESAMKKIDDNNTLAFIV
ALDVLGVANKIGYHLSL