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Sed0018910 (gene) of Chayote v1 genome

Gene IDSed0018910
OrganismSechium edule (Chayote v1)
DescriptionCopper ion binding protein
Genome locationLG03:8134113..8138384
RNA-Seq ExpressionSed0018910
SyntenySed0018910
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147943.1 uncharacterized protein LOC101223062 [Cucumis sativus]1.4e-7477.35Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D EK K KPRR + K PQE KKPQ+KVDQKHTSDDSG LKGSTSDGWPHQP P+FLP+IPPVH AN E+D IR+VL++SERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        V+KLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPC+ ES+ACFQCYKD+P+D LKCA  +K+F  CNRQARQ++SS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

XP_008448899.1 PREDICTED: uncharacterized protein LOC103490925 [Cucumis melo]3.9e-7780.11Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D +K K KPRR R+K PQESKKPQ+KVDQK+TSDDSG LKGSTSDGWPHQPPPLFLP+IPPVH AN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VEKLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPC+ ES+ACFQCYKD+P+D LKCAR +K+F  CNRQARQ++SS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

XP_022152722.1 uncharacterized protein LOC111020378 [Momordica charantia]9.2e-7983.43Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+ML+ D EK K KPRR RTK PQESKKPQIKVDQKHTS DSGMLKGSTSDGWPHQ PPLFLPVIPPVHSAN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VE+LQKQE+NM QEVTQRAKDLHD+EFKLPYQKPMPCL ES ACFQCYKD+ +D LKCARF+K+FA+CNRQARQQMSS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

XP_023539658.1 uncharacterized protein LOC111800275 [Cucurbita pepo subsp. pepo]4.0e-7481.32Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKG-STSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESER
        MGDFSIQISSNLVDMLI D EK K  PRR RTKAPQESKKPQIKVDQKHTSDDSGMLKG S SDGWPH+PPPLF    PPVH AN EID I++VL+ESE+
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKG-STSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESER

Query:  VVEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VVEKLQKQEDN+RQEV+QRAKDLH+KEFKLPYQKPMPCL ESEACFQCYK+ P+D LKC R +KSFA CNRQARQQMS V+K
Subjt:  VVEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

XP_038876833.1 uncharacterized protein LOC120069208 [Benincasa hispida]2.4e-7983.43Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D EK K KPRR R+K PQESKKPQIKVDQKHTSDDSGMLKGSTSDGWP+QPPPLFLP+IPPVHSAN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VEKLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPCL ES+ACFQCYKD+P++ LKCAR +K+F  CNRQARQQ+SSV+K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

TrEMBL top hitse value%identityAlignment
A0A0A0L5M8 Uncharacterized protein6.7e-7577.35Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D EK K KPRR + K PQE KKPQ+KVDQKHTSDDSG LKGSTSDGWPHQP P+FLP+IPPVH AN E+D IR+VL++SERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        V+KLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPC+ ES+ACFQCYKD+P+D LKCA  +K+F  CNRQARQ++SS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

A0A1S3BKT1 uncharacterized protein LOC1034909251.9e-7780.11Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D +K K KPRR R+K PQESKKPQ+KVDQK+TSDDSG LKGSTSDGWPHQPPPLFLP+IPPVH AN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VEKLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPC+ ES+ACFQCYKD+P+D LKCAR +K+F  CNRQARQ++SS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

A0A5D3D7J8 Uncharacterized protein1.9e-7780.11Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+MLI D +K K KPRR R+K PQESKKPQ+KVDQK+TSDDSG LKGSTSDGWPHQPPPLFLP+IPPVH AN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VEKLQKQEDNM +EVTQRAKDLHDKEFKLPYQKPMPC+ ES+ACFQCYKD+P+D LKCAR +K+F  CNRQARQ++SS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

A0A6J1DFM6 uncharacterized protein LOC1110203784.5e-7983.43Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISSNLV+ML+ D EK K KPRR RTK PQESKKPQIKVDQKHTS DSGMLKGSTSDGWPHQ PPLFLPVIPPVHSAN E+D IR+VL+ESERV
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VE+LQKQE+NM QEVTQRAKDLHD+EFKLPYQKPMPCL ES ACFQCYKD+ +D LKCARF+K+FA+CNRQARQQMSS +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

A0A6J1KZF5 uncharacterized protein LOC1114984889.6e-7481.32Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLK-GSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESER
        MGDFSIQISSNLVDMLI D EK K  PRR RTKAPQESKKPQIKVDQKHTSDDSGMLK GS SDGWPH+PP LFL    PVH AN EID I++VL+ESE+
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLK-GSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESER

Query:  VVEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        VVE LQKQEDN+RQEVTQRAKDLH++EFKLPYQKPMPCL ESEACFQCYKD P+D LKCAR +KSFA CNRQARQQMSSV++
Subjt:  VVEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G12340.1 copper ion binding1.6e-3344.2Show/hide
Query:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV
        MGDFSIQISS L++ L   N++ K + ++T+ K   +SK+   + ++K  +  + +         P Q PP F P IPP  +A+TE++ I++V++ESE+V
Subjt:  MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERV

Query:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK
        +EKL+ QE N+ +EVT+RAKDL +KEFK+P  KPMPC  + EA  +CYK+N    LKC+ F+KSF +C R++RQQ++  +K
Subjt:  VEKLQKQEDNMRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATTTTTCCATTCAGATTAGTTCAAACTTAGTTGATATGCTAATTACTGATAATGAAAAACTGAAAAGCAAACCGAGAAGAACTAGAACCAAGGCACCTCAAGA
GAGTAAAAAACCCCAAATAAAGGTTGATCAGAAACATACATCTGATGATTCTGGAATGCTGAAGGGAAGCACAAGTGATGGATGGCCACACCAACCTCCTCCACTCTTCC
TTCCCGTAATTCCTCCCGTGCATTCGGCCAACACAGAGATAGACGTAATCCGAAACGTCCTCCGAGAGAGCGAAAGGGTCGTGGAGAAGTTGCAGAAGCAGGAGGATAAC
ATGCGACAGGAAGTCACTCAAAGAGCAAAAGACCTCCATGACAAGGAGTTCAAGCTCCCTTACCAGAAGCCAATGCCGTGCTTGGTTGAAAGTGAAGCTTGCTTTCAATG
CTACAAAGATAATCCTGATGACCGCCTGAAATGTGCTCGTTTCATAAAATCATTTGCCGAATGTAACCGCCAAGCTCGGCAGCAAATGAGCTCGGTCCAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
TGAACCCAAAATAAAAGAAAGGAGCGTGGTTATTTGGGTGCAGTTCGAGAATTGATTCTGTGTTGGCCCTAATTCCCCAAAGACTCTCACCGGTAGTCTGCCTCGGAACA
TAATGGGTGATTTTTCCATTCAGATTAGTTCAAACTTAGTTGATATGCTAATTACTGATAATGAAAAACTGAAAAGCAAACCGAGAAGAACTAGAACCAAGGCACCTCAA
GAGAGTAAAAAACCCCAAATAAAGGTTGATCAGAAACATACATCTGATGATTCTGGAATGCTGAAGGGAAGCACAAGTGATGGATGGCCACACCAACCTCCTCCACTCTT
CCTTCCCGTAATTCCTCCCGTGCATTCGGCCAACACAGAGATAGACGTAATCCGAAACGTCCTCCGAGAGAGCGAAAGGGTCGTGGAGAAGTTGCAGAAGCAGGAGGATA
ACATGCGACAGGAAGTCACTCAAAGAGCAAAAGACCTCCATGACAAGGAGTTCAAGCTCCCTTACCAGAAGCCAATGCCGTGCTTGGTTGAAAGTGAAGCTTGCTTTCAA
TGCTACAAAGATAATCCTGATGACCGCCTGAAATGTGCTCGTTTCATAAAATCATTTGCCGAATGTAACCGCCAAGCTCGGCAGCAAATGAGCTCGGTCCAGAAGTAGGA
TTGTCATCTGCAATGAATCTTTATTGAAACTTTTTGTTCTCACTGTTCACTGGAAAAAAGAAAAAAGAAAAACAGATTTTGCCAACAAAAATAACCCAGGAACAAGACAG
TTGGGGGTTGCTTTTAGCCAAAGTTGTGTATTTGCTTCTTTAACCGCATTGGCCAGCCATTATTTTTGGCTCTGCAAGACGTGAGGTATGTTTTGTAATGAAAAGAGATC
AGCTGCATTTATGAAGGTACCCTATTTTTTGAGATTTTTGTGAAGGTACTTTTAAAACTTTGATTTTAAGGAAATATGTTATTAGCTCA
Protein sequenceShow/hide protein sequence
MGDFSIQISSNLVDMLITDNEKLKSKPRRTRTKAPQESKKPQIKVDQKHTSDDSGMLKGSTSDGWPHQPPPLFLPVIPPVHSANTEIDVIRNVLRESERVVEKLQKQEDN
MRQEVTQRAKDLHDKEFKLPYQKPMPCLVESEACFQCYKDNPDDRLKCARFIKSFAECNRQARQQMSSVQK