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Sed0018924 (gene) of Chayote v1 genome

Gene IDSed0018924
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG13:7784514..7784801
RNA-Seq ExpressionSed0018924
SyntenySed0018924
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]7.3e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
KAA0051409.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.3e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.3e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.3e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]2.8e-3478.95Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VP QVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA+++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
TrEMBL top hitse value%identityAlignment
A0A1S3C2T7 uncharacterized protein LOC1034962171.3e-3478.95Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VP QVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA+++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
A0A5A7SLT1 Putative copia-type polyprotein3.5e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-3580Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
        M NNN+VPFQVPRLT ENYSS CIRMKALLGSQDVW+IV  GY+EPE+DA ++ AQRE LQ+TRKKDQKALTIIHQAIDD NFEKI GATTA +A
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein4.0e-2351.06Show/hide
Query:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATE
        M +NN VPFQVP LT  NY +  +RMKA+LG+ DVWEIV++G+ EPEN+ ++S  Q++ L+ +RK+D+KAL +I+Q +D+  FEK+  AT+A +
Subjt:  MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAACAACAATATGGTTCCTTTCCAAGTGCCTCGCTTGACGAATGAAAATTACAGTAGTATGTGTATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGA
AATTGTTGATAGAGGCTATGACGAGCCTGAAAATGATGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGCAAAGTACTAGAAAGAAAGATCAAAAGGCGCTCACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCAACAGAAGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAACAACAATATGGTTCCTTTCCAAGTGCCTCGCTTGACGAATGAAAATTACAGTAGTATGTGTATACGAATGAAAGCACTACTTGGTTCACAAGATGTTTGGGA
AATTGTTGATAGAGGCTATGACGAGCCTGAAAATGATGCCACCATAAGTCATGCTCAAAGAGAAGTTTTGCAAAGTACTAGAAAGAAAGATCAAAAGGCGCTCACCATTA
TTCATCAAGCAATTGATGATACAAATTTTGAGAAGATTTTTGGAGCAACTACTGCAACAGAAGCATAG
Protein sequenceShow/hide protein sequence
MTNNNMVPFQVPRLTNENYSSMCIRMKALLGSQDVWEIVDRGYDEPENDATISHAQREVLQSTRKKDQKALTIIHQAIDDTNFEKIFGATTATEA