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Sed0018951 (gene) of Chayote v1 genome

Gene IDSed0018951
OrganismSechium edule (Chayote v1)
Description2Fe-2S ferredoxin-type domain-containing protein
Genome locationLG03:9933887..9950868
RNA-Seq ExpressionSed0018951
SyntenySed0018951
Gene Ontology termsGO:0009536 - plastid (cellular component)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002281853.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Vitis vinifera]3.6e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

XP_022951361.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]3.6e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

XP_023002507.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima]3.6e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

XP_023538465.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Cucurbita pepo subsp. pepo]3.6e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

XP_038884162.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X2 [Benincasa hispida]3.6e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

TrEMBL top hitse value%identityAlignment
A0A2G5FB95 2Fe-2S ferredoxin-type domain-containing protein2.3e-2681.01Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GK+MNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

A0A5B7BKB3 2Fe-2S ferredoxin-type domain-containing protein1.8e-2681.01Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GK+MNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL+CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

A0A6J1GHD4 photosynthetic NDH subunit of subcomplex B 3, chloroplastic1.8e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

A0A6J1KTR7 photosynthetic NDH subunit of subcomplex B 3, chloroplastic1.8e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

F6H3F7 2Fe-2S ferredoxin-type domain-containing protein1.8e-2682.28Show/hide
Query:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        +IEL    GKLMNCGG GSCGT I  IIDGK+L NERTNTELRYLKKKPESWRL CQTIV NKENSGKVVVQRLPQWK+
Subjt:  EIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

SwissProt top hitse value%identityAlignment
Q9LU21 Photosynthetic NDH subunit of subcomplex B 3, chloroplastic2.8e-1351.47Show/hide
Query:  LMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWK
        L NC G G+C T +  I++GK L N RT+ E   LK+KP++WRL CQT V N +++G VV+Q+LP+WK
Subjt:  LMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWK

Arabidopsis top hitse value%identityAlignment
AT3G16250.1 NDH-dependent cyclic electron flow 12.0e-1451.47Show/hide
Query:  LMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWK
        L NC G G+C T +  I++GK L N RT+ E   LK+KP++WRL CQT V N +++G VV+Q+LP+WK
Subjt:  LMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWK

AT4G32590.1 2Fe-2S ferredoxin-like superfamily protein3.2e-2873.17Show/hide
Query:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE
        Q  +IEL    GK+MNCGG GSCGT I  I+DG++L NERT+TE RYLKKKPESWRL CQTIV NKENSGKVVVQR+PQWK+
Subjt:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKE

AT4G32590.3 2Fe-2S ferredoxin-like superfamily protein4.4e-2271.83Show/hide
Query:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGK
        Q  +IEL    GK+MNCGG GSCGT I  I+DG++L NERT+TE RYLKKKPESWRL CQTIV NKENSGK
Subjt:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGK

AT4G32590.4 2Fe-2S ferredoxin-like superfamily protein3.9e-1064Show/hide
Query:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKK
        Q  +IEL    GK+MNCGG GSCGT I  I+DG++L NERT+TE RYLKK
Subjt:  QKPEIELEFLGGKLMNCGGDGSCGTFI--IIDGKNLSNERTNTELRYLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCTGAACGTCACCGCCGCTTTATTGTCATTCCAGAAGCCTGAAATCGAGCTCGAATTTCTTGGGGGAAAATTGATGAACTGTGGTGGTGACGGAAGCTGCGG
GACTTTTATTATAATTGATGGGAAGAATCTATCGAATGAGAGAACGAATACTGAACTTCGTTATCTGAAGAAGAAACCTGAAAGTTGGAGGCTTACTTGTCAGACAATTG
TTAGAAATAAGGAGAACTCTGGCAAGGTTGTGGTCCAAAGGTTGCCTCAATGGAAGGAAGTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCCTGAACGTCACCGCCGCTTTATTGTCATTCCAGAAGCCTGAAATCGAGCTCGAATTTCTTGGGGGAAAATTGATGAACTGTGGTGGTGACGGAAGCTGCGG
GACTTTTATTATAATTGATGGGAAGAATCTATCGAATGAGAGAACGAATACTGAACTTCGTTATCTGAAGAAGAAACCTGAAAGTTGGAGGCTTACTTGTCAGACAATTG
TTAGAAATAAGGAGAACTCTGGCAAGGTTGTGGTCCAAAGGTTGCCTCAATGGAAGGAAGTAATTTAG
Protein sequenceShow/hide protein sequence
MASLNVTAALLSFQKPEIELEFLGGKLMNCGGDGSCGTFIIIDGKNLSNERTNTELRYLKKKPESWRLTCQTIVRNKENSGKVVVQRLPQWKEVI