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Sed0018953 (gene) of Chayote v1 genome

Gene IDSed0018953
OrganismSechium edule (Chayote v1)
DescriptionK-box region and MADS-box transcription factor family protein
Genome locationLG03:17043008..17044541
RNA-Seq ExpressionSed0018953
SyntenySed0018953
Gene Ontology termsGO:0010582 - floral meristem determinacy (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144163.1 truncated transcription factor CAULIFLOWER A isoform X1 [Cucumis sativus]1.5e-2395.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

XP_008445435.1 PREDICTED: truncated transcription factor CAULIFLOWER A [Cucumis melo]1.5e-2395.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

XP_022951531.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita moschata]1.5e-2395.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

XP_023002154.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita maxima]1.5e-2395.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

XP_031742602.1 truncated transcription factor CAULIFLOWER A isoform X2 [Cucumis sativus]1.5e-2395.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

TrEMBL top hitse value%identityAlignment
A0A1S3BCQ3 truncated transcription factor CAULIFLOWER A7.1e-2495.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

A0A6A2WF32 Floral homeotic protein APETALA 12.1e-2392.06Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEIS+LCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

A0A6J1BSN0 truncated transcription factor CAULIFLOWER A-like1.6e-2393.65Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEY++DSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

A0A6J1GHU4 truncated transcription factor CAULIFLOWER A-like7.1e-2495.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

A0A6J1KPM9 truncated transcription factor CAULIFLOWER A-like7.1e-2495.24Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRV+LKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALI+FSHKGKLFEYSSDSS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

SwissProt top hitse value%identityAlignment
A2IB53 Floral homeotic protein APETALA 14.7e-2591.8Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

D7KWY6 Floral homeotic protein APETALA 14.7e-2591.8Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

P35631 Floral homeotic protein APETALA 14.7e-2591.8Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

Q41276 Floral homeotic protein APETALA 14.7e-2591.8Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

Q96356 Floral homeotic protein APETALA 1-28.0e-2590.16Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGL+KKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

Arabidopsis top hitse value%identityAlignment
AT1G24260.1 K-box region and MADS-box transcription factor family protein1.7e-2279.37Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRVELKRIENKINRQVTF+KR+ GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ S SS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

AT1G24260.2 K-box region and MADS-box transcription factor family protein1.7e-2279.37Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV
        MGRGRVELKRIENKINRQVTF+KR+ GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ S SS+
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV

AT1G26310.1 K-box region and MADS-box transcription factor family protein8.3e-2590.16Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRVELKRIENKINRQVTFSKR+ GLLKKA EISVLCDAEV+LI+FSHKGKLFEYSS+S
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

AT1G69120.1 K-box region and MADS-box transcription factor family protein3.4e-2691.8Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR+AGLLKKAHEISVLCDAEVAL++FSHKGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS

AT5G60910.1 AGAMOUS-like 86.3e-2590.16Show/hide
Query:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS
        MGRGRV+LKRIENKINRQVTFSKR++GLLKKAHEISVLCDAEVALI+FS KGKLFEYS+DS
Subjt:  MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAGGTAGGGTTGAGCTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTCAAGAAGGCTCATGAAATCTCTGT
TCTCTGTGATGCTGAAGTTGCTTTGATTCTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCTTCAGATTCCAGCGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAGGTAGGGTTGAGCTGAAAAGAATTGAGAACAAAATAAACAGGCAGGTTACTTTCTCCAAAAGGAAAGCTGGTTTGCTCAAGAAGGCTCATGAAATCTCTGT
TCTCTGTGATGCTGAAGTTGCTTTGATTCTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCTTCAGATTCCAGCGTATAA
Protein sequenceShow/hide protein sequence
MGRGRVELKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALILFSHKGKLFEYSSDSSV