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Sed0018962 (gene) of Chayote v1 genome

Gene IDSed0018962
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:37899194..37899748
RNA-Seq ExpressionSed0018962
SyntenySed0018962
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5454097.1 hypothetical protein CSKR_110507 [Clonorchis sinensis]4.0e-0558.87Show/hide
Query:  DDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDGGERGGGEEAGGEGEAVGGGGMGVAGGGGDGVGGGGTEVGGVAAE
        DDD DDDG  GGGG          GGGGG   +GG GG V  GGGGG  GV GG GG  GGG    G G   GGGG G  GGGG GVGGGG  V GV   
Subjt:  DDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDGGERGGGEEAGGEGEAVGGGGMGVAGGGGDGVGGGGTEVGGVAAE

Query:  GGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVG
        GGG GVGGGG  V VGGG  GV GGG  V VGGG  G GVG
Subjt:  GGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVG

PNX73898.1 hypothetical protein L195_g029807 [Trifolium pratense]1.5e-0453.07Show/hide
Query:  TPPIAIPTTSPVELLEDDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGL-------VEDGGGGG------VEGVEGGDG---GERGGGEE--AG
        T P AIPTT+PVE+L+++DG D G   GG L +G  G+R   GG   E GGDGGL       V DGG GG      V+GV G  G   G  GGG E  AG
Subjt:  TPPIAIPTTSPVELLEDDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGL-------VEDGGGGG------VEGVEGGDG---GERGGGEE--AG

Query:  GEGEAVGGGGM-GVAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVGVDI
        G  E V GGG  GVAGGG +GV GGG +     A GG EGV GGGE  + GGGA GV GGG  V   GGEDGAG  VDI
Subjt:  GEGEAVGGGGM-GVAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVGVDI

RHN52917.1 hypothetical protein MtrunA17_Chr6g0485771 [Medicago truncatula]8.9e-0554.04Show/hide
Query:  TPPIAIPTTSPVELLEDDDGDDDG---VDGGGGLLDGVDGVREGGGG-GEREIGGDGGLVEDGGGGGVEGVEGG--DGGERGGGEEAGGEGEAVGGGGMG
        T P AIP T PV++L++D G+  G    DGG GL   + GVREGG G      GGD   V  G GG  EGV+GG  DG   GGG+E  G     GGG  G
Subjt:  TPPIAIPTTSPVELLEDDDGDDDG---VDGGGGLLDGVDGVREGGGG-GEREIGGDGGLVEDGGGGGVEGVEGG--DGGERGGGEEAGGEGEAVGGGGMG

Query:  VAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAG
        V GGG  GV GGG E  GVA  GG EGV GGG+  + GGGAVGV GGG V L  GGEDGAG
Subjt:  VAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAG

TrEMBL top hitse value%identityAlignment
A0A2K3L5U0 Uncharacterized protein7.4e-0553.07Show/hide
Query:  TPPIAIPTTSPVELLEDDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGL-------VEDGGGGG------VEGVEGGDG---GERGGGEE--AG
        T P AIPTT+PVE+L+++DG D G   GG L +G  G+R   GG   E GGDGGL       V DGG GG      V+GV G  G   G  GGG E  AG
Subjt:  TPPIAIPTTSPVELLEDDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGL-------VEDGGGGG------VEGVEGGDG---GERGGGEE--AG

Query:  GEGEAVGGGGM-GVAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVGVDI
        G  E V GGG  GVAGGG +GV GGG +     A GG EGV GGGE  + GGGA GV GGG  V   GGEDGAG  VDI
Subjt:  GEGEAVGGGGM-GVAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVGVDI

A0A396HPX3 Uncharacterized protein4.3e-0554.04Show/hide
Query:  TPPIAIPTTSPVELLEDDDGDDDG---VDGGGGLLDGVDGVREGGGG-GEREIGGDGGLVEDGGGGGVEGVEGG--DGGERGGGEEAGGEGEAVGGGGMG
        T P AIP T PV++L++D G+  G    DGG GL   + GVREGG G      GGD   V  G GG  EGV+GG  DG   GGG+E  G     GGG  G
Subjt:  TPPIAIPTTSPVELLEDDDGDDDG---VDGGGGLLDGVDGVREGGGG-GEREIGGDGGLVEDGGGGGVEGVEGG--DGGERGGGEEAGGEGEAVGGGGMG

Query:  VAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAG
        V GGG  GV GGG E  GVA  GG EGV GGG+  + GGGAVGV GGG V L  GGEDGAG
Subjt:  VAGGGGDGVGGGGTEVGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAG

A0A419PEF2 Uncharacterized protein1.9e-0558.87Show/hide
Query:  DDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDGGERGGGEEAGGEGEAVGGGGMGVAGGGGDGVGGGGTEVGGVAAE
        DDD DDDG  GGGG          GGGGG   +GG GG V  GGGGG  GV GG GG  GGG    G G   GGGG G  GGGG GVGGGG  V GV   
Subjt:  DDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDGGERGGGEEAGGEGEAVGGGGMGVAGGGGDGVGGGGTEVGGVAAE

Query:  GGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVG
        GGG GVGGGG  V VGGG  GV GGG  V VGGG  G GVG
Subjt:  GGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVG

A0A803P040 Uncharacterized protein1.5e-0550Show/hide
Query:  TPPIAIPTTSPVELLEDDDGDDDG------VDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDG---GERGGG---EEAGGEGEAV
        T P AIPTT+PV    D+DG+ +G      +DGGGGL  G++GV             +G LV DGGGG ++GV+G DG   G  GGG   +E+GG     
Subjt:  TPPIAIPTTSPVELLEDDDGDDDG------VDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDG---GERGGG---EEAGGEGEAV

Query:  GGGGMGVAGGGGDGVGG---GGTEV--GGVAAEGGGEGVGGGGEV---VLVGGGAVGVTGGGEVVLVGGGEDGAG--VGVDI
        GG G GV G GG+GVGG   GG  V  GG     GG+GV GGGE     + GGGA+GV GGGEV LV GGEDGAG   GVDI
Subjt:  GGGGMGVAGGGGDGVGG---GGTEV--GGVAAEGGGEGVGGGGEV---VLVGGGAVGVTGGGEVVLVGGGEDGAG--VGVDI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCACCGATTGCGATTCCGACGACAAGTCCAGTTGAGTTATTAGAGGATGACGACGGCGATGACGACGGCGTTGATGGAGGCGGAGGACTTCTCGACGGAGTGGA
CGGCGTACGAGAAGGTGGAGGAGGCGGAGAGCGTGAAATCGGCGGCGACGGGGGGCTGGTAGAAGACGGCGGCGGCGGAGGAGTAGAGGGAGTAGAAGGCGGGGATGGCG
GAGAGCGCGGCGGAGGAGAGGAAGCCGGTGGGGAGGGAGAGGCAGTGGGTGGAGGGGGGATGGGAGTAGCCGGCGGCGGCGGCGACGGGGTGGGCGGAGGTGGGACGGAG
GTGGGCGGGGTAGCAGCGGAAGGCGGAGGAGAAGGGGTCGGCGGCGGAGGGGAGGTAGTGTTGGTCGGCGGCGGAGCGGTCGGGGTTACCGGCGGGGGAGAGGTCGTGTT
GGTCGGCGGCGGAGAGGACGGCGCCGGGGTAGGAGTTGACATTGAAACCAGAGATCAAAATCGGAAATCAAAAACTCTCAACCAAAAACAAAAATCAAACAAAACAAAAA
AGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGCCACCGATTGCGATTCCGACGACAAGTCCAGTTGAGTTATTAGAGGATGACGACGGCGATGACGACGGCGTTGATGGAGGCGGAGGACTTCTCGACGGAGTGGA
CGGCGTACGAGAAGGTGGAGGAGGCGGAGAGCGTGAAATCGGCGGCGACGGGGGGCTGGTAGAAGACGGCGGCGGCGGAGGAGTAGAGGGAGTAGAAGGCGGGGATGGCG
GAGAGCGCGGCGGAGGAGAGGAAGCCGGTGGGGAGGGAGAGGCAGTGGGTGGAGGGGGGATGGGAGTAGCCGGCGGCGGCGGCGACGGGGTGGGCGGAGGTGGGACGGAG
GTGGGCGGGGTAGCAGCGGAAGGCGGAGGAGAAGGGGTCGGCGGCGGAGGGGAGGTAGTGTTGGTCGGCGGCGGAGCGGTCGGGGTTACCGGCGGGGGAGAGGTCGTGTT
GGTCGGCGGCGGAGAGGACGGCGCCGGGGTAGGAGTTGACATTGAAACCAGAGATCAAAATCGGAAATCAAAAACTCTCAACCAAAAACAAAAATCAAACAAAACAAAAA
AGTAG
Protein sequenceShow/hide protein sequence
MTPPIAIPTTSPVELLEDDDGDDDGVDGGGGLLDGVDGVREGGGGGEREIGGDGGLVEDGGGGGVEGVEGGDGGERGGGEEAGGEGEAVGGGGMGVAGGGGDGVGGGGTE
VGGVAAEGGGEGVGGGGEVVLVGGGAVGVTGGGEVVLVGGGEDGAGVGVDIETRDQNRKSKTLNQKQKSNKTKK