CuGenDBv2

Gene ID	Sed0018992
Organism	Sechium edule (Chayote v1)
Description	LRAT domain-containing protein
Genome location	LG02:52470925..52471868
RNA-Seq Expression	Sed0018992
Synteny	Sed0018992
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028534.1 hypothetical protein SDJN02_09715 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-29

53.01

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV---------EVEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE          + EEE EQ TTK NED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV---------EVEEEEEQATTKKNED

XP_022934541.1 uncharacterized protein LOC111441685 [Cucurbita moschata]

1.3e-29

53.59

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV-------EVEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE        + EEE EQ TTK NED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV-------EVEEEEEQATTKKNED

XP_022974858.1 uncharacterized protein LOC111473625 [Cucurbita maxima]

9.7e-30

52.72

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QA+SVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE E           E+E+EQ TTKKNED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED

XP_023538972.1 uncharacterized protein LOC111799745 [Cucurbita pepo subsp. pepo]

1.5e-30

54.4

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE--------EEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE E E        EE+EQ TTKKNED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE--------EEEEQATTKKNED

XP_023539431.1 uncharacterized protein LOC111800080, partial [Cucurbita pepo subsp. pepo]

1.5e-30

54.4

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE--------EEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE E E        EE+EQ TTKKNED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE--------EEEEQATTKKNED

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZ69 NC domain-containing family protein

3.0e-29

54.19

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG  PSVFL RVRGGTCTTATS+SFDM+IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE-----EEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL +ES  SE E E     +EEE+ TTKK ED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVE-----EEEEQATTKKNED

A0A5D3DBA2 Bifunctional fucokinase/fucose pyrophosphorylase isoform X1

4.0e-29

54.19

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG  PSVFL RVRGG+CTTATS+SFDM+IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE-----VEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL +ES  SE E      EEEEE+ TTKK ED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE-----VEEEEEQATTKKNED

A0A6J1F236 uncharacterized protein LOC111441685

6.1e-30

53.59

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QASSVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV-------EVEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE        + EEE EQ TTK NED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEV-------EVEEEEEQATTKKNED

A0A6J1IH34 uncharacterized protein LOC111475078 isoform X1

1.4e-29

52.17

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QA+SVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE E           E+E+EQ +TKKNED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED

A0A6J1IIS4 uncharacterized protein LOC111473625

4.7e-30

52.72

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFLRNGSLY F+YG TPSVFL RVRGGTCTTATS+SFD++IHRA YLLQN      +     E         LLI        S QA+SVI A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED
        ILSSPLKLLMP                          DVIKVAV+DLPL++ES+ SE E           E+E+EQ TTKKNED
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVE----------VEEEEEQATTKKNED

SwissProt top hits

e value

%identity

Alignment

Q93V51 Protein LEAD-SENSITIVE 1

5.5e-12

38.94

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Query:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISA
        ++ CL+CFL  G LY FEY    + FL + RGGTCT A ++  ++++HRAK+LLQN       V K   +   ++   +LL+        S QA S+I  
Subjt:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISA

Query:  HLAAILSSPLKLL
         +AA+LS+P++LL
Subjt:  HLAAILSSPLKLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G01225.1 NC domain-containing protein-related

6.5e-24

45.51

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISAHLA
        CLDCFL+NGSLY FEYG +PSVFL +VRGGTCTTA S++ D +IHRA YLLQN       + K   +   L+    LLI        S QASS++ A LA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISAHLA

Query:  AILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVEEEEEQ
        A+LSSP KLL+P                          DVIKV+V+DL L ++    E   EEEE++
Subjt:  AILSSPLKLLMP-------------------------IDVIKVAVKDLPLYIESLCSEVEVEEEEEQ

AT4G00905.1 NC domain-containing protein-related

1.8e-18

43.62

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Query:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA
        CLDCFL+ GSLY F+YG + S+FL R RGGTCTTA S+    +IHRA +LLQN      +     E         LLI        S QASS+I A LAA
Subjt:  CLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKR-ETKHDDLHDSLLI--------SSQASSVISAHLAA

Query:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPL
        +LSSPL LL+P                          DVIKV V+DL L
Subjt:  ILSSPLKLLMP-------------------------IDVIKVAVKDLPL

AT5G06370.1 NC domain-containing protein-related

3.9e-13

38.94

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Query:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISA
        ++ CL+CFL  G LY FEY    + FL + RGGTCT A ++  ++++HRAK+LLQN       V K   +   ++   +LL+        S QA S+I  
Subjt:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLH--DSLLI--------SSQASSVISA

Query:  HLAAILSSPLKLL
         +AA+LS+P++LL
Subjt:  HLAAILSSPLKLL

AT5G16330.1 NC domain-containing protein-related

4.8e-11

51.85

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Query:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLL
        ++ CLDCFL  G++Y FEY  +P+ F+ + R GTCT A S+  D +I RAKYLL
Subjt:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLL

AT5G16360.1 NC domain-containing protein-related

1.3e-11

57.41

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Query:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLL
        ++ CLDCFL  G+L+ FEY A+PS+FL + RGGTCT A+S+  D +I RAK+LL
Subjt:  LNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLL

Sequences

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CDS sequence

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ATGCCTGGTGAAATTATTTCTTCTTCAAAAGTTAGTTTCAAATTCATTGAACATGGTCATTACCACATACATTATAGCAATCTAAACCCTTGTCTGGATTGCTTCCTAAG
AAATGGATCCCTTTACTCCTTTGAGTATGGAGCCACCCCATCAGTTTTCCTTTACAGGGTTAGGGGTGGCACTTGCACCACTGCAACATCCAATTCATTCGATATGATTA
TTCATCGAGCAAAGTATCTTCTTCAAAACAGATTAAAAAAATTGCAACTTGTTTCAAAACGTGAGACAAAACACGATGATTTACATGATTCACTATTAATAAGCAGTCAA
GCTTCTTCAGTCATAAGTGCTCATTTGGCTGCCATTCTTTCCTCTCCTCTAAAGTTGCTAATGCCAATTGATGTGATTAAGGTGGCAGTGAAGGACTTGCCACTTTATAT
CGAGTCGTTGTGTAGCGAAGTTGAAGTCGAAGAAGAAGAAGAACAAGCCACCACCAAGAAAAATGAAGATTAA

mRNA sequence

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Protein sequence

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MPGEIISSSKVSFKFIEHGHYHIHYSNLNPCLDCFLRNGSLYSFEYGATPSVFLYRVRGGTCTTATSNSFDMIIHRAKYLLQNRLKKLQLVSKRETKHDDLHDSLLISSQ
ASSVISAHLAAILSSPLKLLMPIDVIKVAVKDLPLYIESLCSEVEVEEEEEQATTKKNED

Sed0018992 (gene) of Chayote v1 genome