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Sed0019016 (gene) of Chayote v1 genome

Gene IDSed0019016
OrganismSechium edule (Chayote v1)
DescriptionU6 snRNA-associated Sm-like protein LSm3
Genome locationLG11:29531559..29535275
RNA-Seq ExpressionSed0019016
SyntenySed0019016
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0033962 - cytoplasmic mRNA processing body assembly (biological process)
GO:0000932 - P-body (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034105 - Sm-like protein Lsm3
IPR040002 - U6 snRNA-associated Sm-like protein Lsm3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8377163.1 hypothetical protein HHK36_030536 [Tetracentron sinense]2.9e-2994.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRPLF
        MA+EEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEI+TTVEIDDETYEEIVR LF
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRPLF

NP_001235961.1 Sm-like protein LSM3A-like [Glycine max]8.4e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

XP_021889077.1 sm-like protein LSM3A [Carica papaya]8.4e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

XP_024960037.1 sm-like protein LSM3A [Cynara cardunculus var. scolymus]1.1e-2897.18Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTT+EIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

XP_024962288.1 sm-like protein LSM3A [Cynara cardunculus var. scolymus]8.4e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

TrEMBL top hitse value%identityAlignment
A0A0B2SAJ4 U6 snRNA-associated Sm-like protein LSm34.1e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A103YMA2 U6 snRNA-associated Sm-like protein LSm34.1e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A151RN45 U6 snRNA-associated Sm-like protein LSm34.1e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

A0A1S3UK26 U6 snRNA-associated Sm-like protein LSm34.1e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

C6SWG5 U6 snRNA-associated Sm-like protein LSm34.1e-2998.59Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRG+LHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

SwissProt top hitse value%identityAlignment
P62310 U6 snRNA-associated Sm-like protein LSm37.6e-2584.62Show/hide
Query:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

P62311 U6 snRNA-associated Sm-like protein LSm37.6e-2584.62Show/hide
Query:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q32PE9 U6 snRNA-associated Sm-like protein LSm37.6e-2584.62Show/hide
Query:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        + V+EPLDLIRLSLDERIYVK+R+DRELRGRLHAYDQHLNMILGDVEE VTT+EID+ETYEEI +
Subjt:  SAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q9C6K5 Sm-like protein LSM3B3.3e-2887.32Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Q9LMN4 Sm-like protein LSM3A9.6e-2881.69Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE++TT+EIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

Arabidopsis top hitse value%identityAlignment
AT1G21190.1 Small nuclear ribonucleoprotein family protein6.8e-2981.69Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EE++ V+EPLDLIRLS++ERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE++TT+EIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

AT1G76860.1 Small nuclear ribonucleoprotein family protein2.4e-2987.32Show/hide
Query:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR
        M+ EEE+ V+EPLDLIRLSLDERIYVKLRSDRELRG+LHA+DQHLNMILGDVEE +TTVEIDDETYEEIVR
Subjt:  MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVR

AT2G47640.1 Small nuclear ribonucleoprotein family protein1.2e-0437.29Show/hide
Query:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV
        TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V
Subjt:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV

AT2G47640.2 Small nuclear ribonucleoprotein family protein1.2e-0437.29Show/hide
Query:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV
        TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V
Subjt:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV

AT2G47640.3 Small nuclear ribonucleoprotein family protein1.2e-0437.29Show/hide
Query:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV
        TEEE     PL ++ +S+  + ++ +  R++R+L GR+ A+D+H NM+L +V E+ T V
Subjt:  TEEESAVKEPLDLIRLSL--DERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTGAGGAAGAAAGCGCTGTGAAGGAGCCGTTGGATCTCATAAGGCTGAGTCTCGACGAGCGCATCTACGTCAAGCTTCGCTCTGATCGCGAACTTCGTGGCAG
ACTCCATGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCACGGTTGAGATTGATGATGAGACCTATGAAGAGATAGTTCGGCCGCTTT
TTCAAAAGAGTTGCCGTTTAGTCTTTGAGATCTTGCCAACATCCTTGCGGATAATGGACTTTGTATATGGGCATTCCACCAACAGTTGA
mRNA sequenceShow/hide mRNA sequence
AAATCATAAACCCCATTGTTGAATACAGAGAGCTTCGAGAGATCGACAATGGCGACTGAGGAAGAAAGCGCTGTGAAGGAGCCGTTGGATCTCATAAGGCTGAGTCTCGA
CGAGCGCATCTACGTCAAGCTTCGCTCTGATCGCGAACTTCGTGGCAGACTCCATGCTTATGATCAGCATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACCA
CGGTTGAGATTGATGATGAGACCTATGAAGAGATAGTTCGGCCGCTTTTTCAAAAGAGTTGCCGTTTAGTCTTTGAGATCTTGCCAACATCCTTGCGGATAATGGACTTT
GTATATGGGCATTCCACCAACAGTTGATAAAACAAAAAAAGTTGTCCTACTACCATGAAGAAGAATAAATTGAAGAGGGAACCGCATAATTTGAAATCTACCATTAGGCA
TTAACTATGATGAAACAACATCGAAGGCTTCATTGGTGGGATCATCTGTTGCTTACTGATTTGGTCTTTGTTTGCTTCTGGTGGGAGCTTCTTCAGGGTTGTCTTTTATT
TTTGTTTATGTTTTGCTTTTATCCCTTTCGGTGGTGCAAATTGTGTTTGGTTTCTTTGTTTTCTCTTATCCTTTAGGAGCCTTAAATTGTATTCACCTTGTGCTCGGAGA
TATCACCTTTTTCATTAATGGATGGAATGTTCCCTTTTTTCCAAAAAATACAAGTGTGAAGCATTGTGTTTATAAAGGAGATATAAAACACCTATAGCTCAAAAAATTGA
AGTCAAATCAAAGGAAAGAAAGCAAAGAATAGTAGAATACATCGAATCCCTCAAGTTTGTTCATTGACTCTATCCACACCTGTTGCGTTAACTCAAGCATTTTTCTTGTA
TCTATTATATACTTAAATGGAGATTTCGTACATTGATTGATTTTCTTTTCC
Protein sequenceShow/hide protein sequence
MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGRLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRPLFQKSCRLVFEILPTSLRIMDFVYGHSTNS