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Sed0019052 (gene) of Chayote v1 genome

Gene IDSed0019052
OrganismSechium edule (Chayote v1)
DescriptionMitochondrial import inner membrane translocase subunit
Genome locationLG01:66823486..66827202
RNA-Seq ExpressionSed0019052
SyntenySed0019052
Gene Ontology termsGO:0045039 - protein insertion into mitochondrial inner membrane (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0042719 - mitochondrial intermembrane space protein transporter complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004217 - Tim10-like
IPR035427 - Tim10-like domain superfamily
IPR039238 - Mitochondrial import inner membrane translocase subunit Tim8/13


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145880.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucumis sativus]2.6e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SS QFSA+E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

XP_022159838.1 mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia]2.2e-3082.76Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS  SSQFSA E +DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+S+A+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

XP_022929052.1 mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata]3.4e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SSSQFS +E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

XP_023520535.1 mitochondrial import inner membrane translocase subunit Tim13 [Cucurbita pepo subsp. pepo]7.6e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SSSQFS +E RDQLKTQLAQAYAEEFLET+R KCF KCITKPGSSLSGSESSC SRCMERYIEAT I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

XP_038906948.1 mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida]6.9e-3286.21Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SSSQFSA+E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

TrEMBL top hitse value%identityAlignment
A0A0A0KK66 Mitochondrial import inner membrane translocase subunit1.3e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SS QFSA+E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

A0A1S3AUN2 Mitochondrial import inner membrane translocase subunit1.3e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SS QFSA+E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

A0A6J1DZZ6 Mitochondrial import inner membrane translocase subunit1.1e-3082.76Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS  SSQFSA E +DQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT+I+S+A+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

A0A6J1ELP2 Mitochondrial import inner membrane translocase subunit1.7e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SSSQFS +E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

A0A6J1I4K9 Mitochondrial import inner membrane translocase subunit1.7e-3185.06Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH
        MDSFSSPSS SSSQFS +E RDQLKTQLAQAYAEEFLET+R KCF+KCITKPGSSLSGSESSC SRCMERYIEAT I+SRA+F  PH
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH

SwissProt top hitse value%identityAlignment
Q6DGJ3 Mitochondrial import inner membrane translocase subunit Tim136.3e-1244.58Show/hide
Query:  MDSFSS--PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRA
        M+ F S   S +SS +     + +Q+K Q+A A A+E L+ + +KCF+KCI KPGS+L  SE  C + CM+RY++A N +SRA
Subjt:  MDSFSS--PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRA

Q8AVK1 Mitochondrial import inner membrane translocase subunit Tim13-B2.2e-1246.43Show/hide
Query:  MDSFSSPSS---NSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRA
        MD F S  S   +SS +     + +Q+K Q+A A A+E L+ + +KCF KCI KPG SL  SE  C + CM+RY++A NI+SRA
Subjt:  MDSFSSPSS---NSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRA

Q9VTN3 Mitochondrial import inner membrane translocase subunit Tim131.1e-1144.59Show/hide
Query:  SSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFN
        +++     EL +Q+K Q+A A A+E L  + EKCF+KCI KPG SL  +E  C S+CM+R+++A N++SR   N
Subjt:  SSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFN

Q9XGY5 Mitochondrial import inner membrane translocase subunit Tim132.7e-2368.24Show/hide
Query:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNA
        MDSF   SS+S S  +   L DQ+K QLAQAYA+EFLETV  KCF KC+TKPGSSLSGSESSC SRC++RYIEAT I+SRA+F++
Subjt:  MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNA

Q9XH48 Mitochondrial import inner membrane translocase subunit TIM134.0e-2265.48Show/hide
Query:  MDSFSS-PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMF
        MDS+SS P   S S  S   + + +KTQLAQAYAEE +ET+R KCF+KC+TKPGSSL GSESSC SRC+ERY+EAT IISR++F
Subjt:  MDSFSS-PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMF

Arabidopsis top hitse value%identityAlignment
AT1G61570.1 translocase of the inner mitochondrial membrane 132.8e-2365.48Show/hide
Query:  MDSFSS-PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMF
        MDS+SS P   S S  S   + + +KTQLAQAYAEE +ET+R KCF+KC+TKPGSSL GSESSC SRC+ERY+EAT IISR++F
Subjt:  MDSFSS-PSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMF

AT5G50810.1 translocase inner membrane subunit 82.0e-0538.1Show/hide
Query:  ELRDQLKTQLAQAYAEEFLETVREKCFEKCITK-PGSSLSGSESSCTSRCMERYIEATNIISR
        EL   L  +  +A   E +  +   C++KCIT  PGS  S SESSC + C +RY++ + II +
Subjt:  ELRDQLKTQLAQAYAEEFLETVREKCFEKCITK-PGSSLSGSESSCTSRCMERYIEATNIISR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCGTTTTCATCGCCTTCGAGCAATTCCTCTTCCCAGTTTTCGGCATCTGAATTGAGGGATCAGCTCAAGACTCAGCTCGCCCAGGCCTACGCCGAGGAGTTTCT
CGAGACCGTAAGAGAGAAGTGCTTTGAGAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAGAGCAGTTGCACCTCCAGGTGCATGGAGCGCTATATTGAGG
CCACCAACATCATCAGTAGAGCCATGTTTAATGCACCACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCGTTTTCATCGCCTTCGAGCAATTCCTCTTCCCAGTTTTCGGCATCTGAATTGAGGGATCAGCTCAAGACTCAGCTCGCCCAGGCCTACGCCGAGGAGTTTCT
CGAGACCGTAAGAGAGAAGTGCTTTGAGAAGTGCATCACAAAGCCAGGGTCAAGCCTAAGTGGGAGTGAGAGCAGTTGCACCTCCAGGTGCATGGAGCGCTATATTGAGG
CCACCAACATCATCAGTAGAGCCATGTTTAATGCACCACACTGA
Protein sequenceShow/hide protein sequence
MDSFSSPSSNSSSQFSASELRDQLKTQLAQAYAEEFLETVREKCFEKCITKPGSSLSGSESSCTSRCMERYIEATNIISRAMFNAPH