; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0019070 (gene) of Chayote v1 genome

Gene IDSed0019070
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationLG12:2899289..2902939
RNA-Seq ExpressionSed0019070
SyntenySed0019070
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]7.4e-5590.09Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NEDCR NWRED
Subjt:  NEDCRYNWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]3.3e-5590.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR NWRED
Subjt:  NEDCRYNWRED

XP_022152387.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]3.9e-5690.09Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+CH+ENRVKIKRKQHL+KKELEPIIS+DDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR+NWRED
Subjt:  NEDCRYNWRED

XP_022152562.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]6.1e-5790.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+CH+ENRVKIKRKQHL+KKELEPIIS++DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NEDCR NWRED
Subjt:  NEDCRYNWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]1.5e-5590.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR+NWRED
Subjt:  NEDCRYNWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.6e-5590.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR NWRED
Subjt:  NEDCRYNWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.6e-5590.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR NWRED
Subjt:  NEDCRYNWRED

A0A6J1DDT5 DNA-directed RNA polymerase subunit1.9e-5690.09Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+CH+ENRVKIKRKQHL+KKELEPIIS+DDMK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NE+CR+NWRED
Subjt:  NEDCRYNWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit2.9e-5790.99Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+CH+ENRVKIKRKQHL+KKELEPIIS++DMKNAAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NEDCR NWRED
Subjt:  NEDCRYNWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit3.6e-5590.09Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGNMLQFELPNMGK  RFFCP+CPY+ ++ENRVKIKRKQHLVKKELEPIIS+DDMKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
        NEDCR NWRED
Subjt:  NEDCRYNWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC105.4e-1637.72Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDD-MKNAAQTEATCPN--CAFGKAAFIQIQLRSADEPATTFY
        M+FCPTCGN L   +   G+   F C +CPY  H      +  +    +KE++ ++  ++  ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDD-MKNAAQTEATCPN--CAFGKAAFIQIQLRSADEPATTFY

Query:  KCMNEDCRYNWRED
        +C    C++ WRE+
Subjt:  KCMNEDCRYNWRED

Q04307 DNA-directed RNA polymerase III subunit RPC103.5e-1539.47Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPN---CAFGKAAFIQIQLRSADEPATTFY
        + FCP+C NML     + G      C SCPY   +E  ++I  ++ L +KE++ ++      N  QT+  CPN   C    A F Q+Q+RSADEP TTFY
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPN---CAFGKAAFIQIQLRSADEPATTFY

Query:  KCMNEDCRYNWRED
        KC+N  C + W+E+
Subjt:  KCMNEDCRYNWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC101.2e-1541.28Show/hide
Query:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN
        FCP CGN L  E    G+ C RF C +CPY+ H   R    RK   +K+  + +      +N   T   CP C   +A F+Q+Q R ADEP TTFYKC N
Subjt:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMN

Query:  EDCRYNWRE
          C + WR+
Subjt:  EDCRYNWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC101.4e-1640.91Show/hide
Query:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISN-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        FCP CGN L  E    G+ C RF C +CPY+ ++  +V  ++   L  KE++ ++      +N   T   CP C   +A F+Q+Q RSADEP TTFYKC 
Subjt:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISN-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRE
        N  C + WR+
Subjt:  NEDCRYNWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC108.3e-1740.91Show/hide
Query:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISN-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        FCP CGN L  E    G+ C RF C +CPY+ ++  +V  ++   L  KE++ ++      +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC 
Subjt:  FCPTCGNMLQFELPNMGKPC-RFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISN-DDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRE
        N  C + WR+
Subjt:  NEDCRYNWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal1.0e-3050.45Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G   RFFC +CPY+ +++ +V+IK+KQ LVKK +E +++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
           C + WRE+
Subjt:  NEDCRYNWRED

AT2G38560.1 transcript elongation factor IIS8.3e-0439.13Show/hide
Query:  AAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNEDCRYNWR
        A+  +  C  C   K  + Q+Q RSADEP TT+  C+N  C  +W+
Subjt:  AAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNEDCRYNWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.9e-3253.15Show/hide
Query:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM
        MEFCPTCGN+L++E    G   RFFC +CPY+ ++E RV+IK+KQ LVKK +EP+++ DD+  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+
Subjt:  MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCM

Query:  NEDCRYNWRED
           C + WRE+
Subjt:  NEDCRYNWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGCCCAACTTGTGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAACCTTGTAGATTCTTTTGCCCCAGTTGTCCATATATATGTCACATGGAGAA
TAGGGTAAAGATCAAAAGAAAGCAACATTTGGTAAAAAAGGAATTAGAACCAATAATCTCCAATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATT
GTGCATTTGGCAAGGCGGCATTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACGACATTTTATAAGTGCATGAATGAAGATTGTAGATATAATTGGCGTGAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
GGACAACTCCTCCGAATCAGGCGTCTCATTGCTTTGTGTCCTCGCCGATTTCCACTCGCTCTATTATTGATCGATTGAAGACCTAGCTTATGGAGTTTTGCCCAACTTGT
GGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAACCTTGTAGATTCTTTTGCCCCAGTTGTCCATATATATGTCACATGGAGAATAGGGTAAAGATCAAAAGAAA
GCAACATTTGGTAAAAAAGGAATTAGAACCAATAATCTCCAATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGCATTTGGCAAGGCGGCAT
TTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACGACATTTTATAAGTGCATGAATGAAGATTGTAGATATAATTGGCGTGAGGATTAAGCCCCCATGGAAAGA
GCCCTTTGTGATATCATGAGCTTTTCATTACTTTTTATTTTAGAACAATTTTGTTTACTCAACAACTACTGGGGAGTTGAGGGATTCGAACTCAGAGAACAAGTTTTTCA
TTCAGGGTAGAAGTCATTTCTTTTAACATAATATTCCTTATCTGAATAGCCTATAATGGTTGTTTTGCAACTTTGAATAACTCATTTGGTGGAAGGTATGTACACTGCAC
ACCAGTTTTGG
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPNMGKPCRFFCPSCPYICHMENRVKIKRKQHLVKKELEPIISNDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNEDCRYNWRE
D