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Sed0019116 (gene) of Chayote v1 genome

Gene IDSed0019116
OrganismSechium edule (Chayote v1)
DescriptionRibosomal protein L18ae family
Genome locationLG03:11971875..11975225
RNA-Seq ExpressionSed0019116
SyntenySed0019116
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599519.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6088.06Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPNAK + TVQLVKS SD+HLDLLRPSARICSIFKGQ KDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGFLFPVMWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL
        +RRDPRERAGLAAS+IAA  CSVILLV VAV LL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL

XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]2.2e-6187.97Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPN K +QTVQLVKS SDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGF FP+MWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        ARRDPRERAGLAASAIAA  CS+ILL+ VAVLL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]2.9e-6188.81Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPNAK + TVQLVKS SD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGFLFPVMWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL
        +RRDPRERAGLAAS+IAA  CSVILLV VAV LL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL

XP_022999414.1 uncharacterized protein LOC111493795 [Cucurbita maxima]8.4e-6188.06Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPNAK + TVQLVKS SD+HLDLLRP+ARICSIFKGQGKDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGFLFPVMWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL
        +RRDPRERAGLAAS+IAA  CSVILLV VAV LL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]4.4e-6289.47Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPN K +QTVQLVKS SDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGF FP+MWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        ARRDPRERAGLAASAIAA  CS+ILLV VAVLL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein9.0e-6185.71Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPN K +QTVQLVKS SDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLL+DVED+Q+GLYDKPLPCFGCG+GWFSFLLGF FP++WYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        ARRDPRERAGLAASAIAA  CS++LL+ VAVLL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

A0A1S3CAZ9 uncharacterized protein LOC1034986581.1e-6187.97Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPN K +QTVQLVKS SDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGF FP+MWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        ARRDPRERAGLAASAIAA  CS+ILL+ VAVLL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-11.1e-6187.97Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPN K +QTVQLVKS SDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGF FP+MWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        ARRDPRERAGLAASAIAA  CS+ILL+ VAVLL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506861.4e-6188.81Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPNAK + TVQLVKS SD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGFLFPVMWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL
        +RRDPRERAGLAAS+IAA  CSVILLV VAV LL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL

A0A6J1KAT7 uncharacterized protein LOC1114937954.0e-6188.06Show/hide
Query:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN
        MDPNAK + TVQLVKS SD+HLDLLRP+ARICSIFKGQGKDASDHIRSKYTLL+DVEDSQ+GLYDKPLPCFGCG+GWFSFLLGFLFPVMWYYAT LYFWN
Subjt:  MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN

Query:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL
        +RRDPRERAGLAAS+IAA  CSVILLV VAV LL
Subjt:  ARRDPRERAGLAASAIAAFGCSVILLVFVAVLLL

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein5.7e-0441.18Show/hide
Query:  LYDKPLPCFGCGVGWFSFLLGFLF-PVMWYYATFLYFWNARRDPRERAGLAASAIAAFGCSVILLVFV
        + +  LPC G G+GWF F++GFLF  + WY   F+    +  D RE+AG  A +IA    SV+ L+ V
Subjt:  LYDKPLPCFGCGVGWFSFLLGFLF-PVMWYYATFLYFWNARRDPRERAGLAASAIAAFGCSVILLVFV

Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family1.3e-2261.8Show/hide
Query:  RSKYTLLK-DVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        + KY L++ D EDS++G + KPLPCFG G+GWFSFLLGF+FP  WY ATFLY  +   RDPRER+GLAASAIAA   SV L++ V VL+
Subjt:  RSKYTLLK-DVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

AT1G54217.2 Ribosomal protein L18ae family3.3e-2358.95Show/hide
Query:  DASDHIRSKYTLLK-DVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL
        D  +  + KY L++ D EDS++G + KPLPCFG G+GWFSFLLGF+FP  WY ATFLY  +   RDPRER+GLAASAIAA   SV L++ V VL+
Subjt:  DASDHIRSKYTLLK-DVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVAVLL

AT4G26060.1 Ribosomal protein L18ae family2.9e-3561.16Show/hide
Query:  TVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRER
        + +LVKS +DKH  L+RP A+  S      KDA    + +YTL+KDV++ + G+YDKPLPCFGCG+GWFSFLLGF+FP +WYYAT LYF N  R+DPRER
Subjt:  TVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRER

Query:  AGLAASAIAAFGCSVILLVFV
        AGLAASAI A G S++LLV V
Subjt:  AGLAASAIAAFGCSVILLVFV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.9e-3455.97Show/hide
Query:  MDPNAK---TEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLY
        MD N+K        +LVK  +D+H  L++ ++R  S      KDA    + +YTL+KDV+D + G YDKPLPCFGCG+GWFSFLLGF+FP +WYYA FLY
Subjt:  MDPNAK---TEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLY

Query:  FWN-ARRDPRERAGLAASAIAAFGCSVILLVFVA
        F N  R+DPRERAGLAASAI A G S++LLV  A
Subjt:  FWN-ARRDPRERAGLAASAIAAFGCSVILLVFVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.5e-3168.48Show/hide
Query:  KDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVA
        KDA    + +YTL+KDV+D + G YDKPLPCFGCG+GWFSFLLGF+FP +WYYA FLYF N  R+DPRERAGLAASAI A G S++LLV  A
Subjt:  KDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWN-ARRDPRERAGLAASAIAAFGCSVILLVFVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAATGCAAAAACTGAGCAGACAGTGCAACTGGTGAAATCGGCCTCCGATAAGCATCTTGATCTTTTAAGACCATCTGCTCGAATTTGTTCAATATTCAAAGG
CCAAGGAAAAGATGCTTCAGACCATATAAGAAGCAAGTATACTCTTCTCAAAGATGTAGAGGATTCTCAAATAGGGCTATACGACAAACCTCTCCCGTGTTTTGGCTGTG
GCGTAGGATGGTTTTCCTTCCTTCTTGGGTTCTTGTTCCCAGTAATGTGGTACTATGCCACATTTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGAGAGCGAGCGGGA
TTAGCTGCATCTGCCATTGCTGCATTTGGATGTTCAGTTATCTTGTTAGTCTTTGTAGCTGTTCTTCTGTTATAG
mRNA sequenceShow/hide mRNA sequence
CTTATGGTGGTTGATATGTAAATTAAAAATAAAAAGAAACTTCTATTTCTAAACTTTTCGTTATTTTTCAAGTCTCATAAACAAGGGAGACCAATTTTCTCCGCCCGTTG
CTGAAGAACGATAAAGTTGATCATTGCTTAACGTTGAAATTTCCTTCTTAATTCAAGAAAAATCGTGTTTGTTTGTTCAATTTCTACGCTAATTTCCTCTCCGATCCGTC
GAAACCGACAGAAATTGCCGTTTCAATCGCTTCCATTTCACCGTTTCATCGATTCGAACGGGCACGAGGAGACATCGAAAGAATGGAGGCACAGGAGATGTCTAAAATTT
AATATCTGAGTCTCGAAGGTGTAACTAACCTTGAAGAAAGCGTACCTTCAAAGTTCAAGCCTTCGAGCACGACACCACGCATTAGAGACCGCTTTTACTTTTTCTATTGA
CTTTAGCGTGGGAACATATTTAGTCAAGCTAGGTTGTTTATGACCAATTCATCTGACGGCTTGTGGAAGATTGATCAATAGCTCCACATGATCCTTGTCTTCAATGAATT
AGTCTAATGAATTTGGTATAGAAAAAGTGGTGTCAACTTGAACTGTTCATCCTTTCATAAACATCAGCTTCAACATGGATCCAAATGCAAAAACTGAGCAGACAGTGCAA
CTGGTGAAATCGGCCTCCGATAAGCATCTTGATCTTTTAAGACCATCTGCTCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTTCAGACCATATAAGAAGCAA
GTATACTCTTCTCAAAGATGTAGAGGATTCTCAAATAGGGCTATACGACAAACCTCTCCCGTGTTTTGGCTGTGGCGTAGGATGGTTTTCCTTCCTTCTTGGGTTCTTGT
TCCCAGTAATGTGGTACTATGCCACATTTCTCTACTTCTGGAATGCCCGCAGAGATCCAAGAGAGCGAGCGGGATTAGCTGCATCTGCCATTGCTGCATTTGGATGTTCA
GTTATCTTGTTAGTCTTTGTAGCTGTTCTTCTGTTATAGCCCCCATCTCCACGATTGAAACTGCATTCTCTTTGCCCCCATACAGTCTCAAACAGAGCAGGTTCCATGGA
TGTGAAGATAGAGATCGAAGAGTTCTGTCGAGTAACAATGGTGATATCTGTAACCTTTTTTTTTTTTTTATTGCAAGAAAATGTAAATGTTTATGAATCATATTTATACA
TATTTACCACCTTTTTTCAAAAGAGAGTTGTCGCATTTTGAAATACACAAAATATGTAATACATGGGTATTAATGTGAAATAAGATCCCTCTATCTTTTCCAATCTAGAG
AGGTTGAATATAATCTTGTAAACAAAGGCGAGTTTGTTAACCATTTTGTT
Protein sequenceShow/hide protein sequence
MDPNAKTEQTVQLVKSASDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLKDVEDSQIGLYDKPLPCFGCGVGWFSFLLGFLFPVMWYYATFLYFWNARRDPRERAG
LAASAIAAFGCSVILLVFVAVLLL