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Sed0019123 (gene) of Chayote v1 genome

Gene IDSed0019123
OrganismSechium edule (Chayote v1)
DescriptionPre-mRNA-splicing factor SF2
Genome locationLG01:63527661..63527962
RNA-Seq ExpressionSed0019123
SyntenySed0019123
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]1.5e-2679.01Show/hide
Query:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL
        MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALL
Subjt:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL

KCW89084.1 hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis]2.6e-1046.24Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV
        M SAWTNMS A+I RD+EREWEN               +L E+L   +        K  F   I LEHLGANEQW+  +     IALLVCFIV
Subjt:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV

KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]7.5e-3478.79Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF
        M SA TNMSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALLVCFIV+ SALF
Subjt:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF

PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]1.5e-1050Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV
        MASAWTNMSIA+IHRDIER+WE    C +             S+++ T AKILE MRR K     ++    L       CGA+LTSRIALLVCF+V
Subjt:  MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV

TYK05915.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]1.5e-2679.01Show/hide
Query:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL
        MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALL
Subjt:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL

TrEMBL top hitse value%identityAlignment
A0A059DF44 Uncharacterized protein (Fragment)1.3e-1046.24Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV
        M SAWTNMS A+I RD+EREWEN               +L E+L   +        K  F   I LEHLGANEQW+  +     IALLVCFIV
Subjt:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV

A0A0A0KJQ0 Uncharacterized protein3.6e-3478.79Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF
        M SA TNMSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALLVCFIV+ SALF
Subjt:  MASAWTNMSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF

A0A2P5EDP3 Uncharacterized protein (Fragment)7.3e-1150Show/hide
Query:  MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV
        MASAWTNMSIA+IHRDIER+WE    C +             S+++ T AKILE MRR K     ++    L       CGA+LTSRIALLVCF+V
Subjt:  MASAWTNMSIAIIHRDIEREWENHYTCTL-------------SEELCT-AKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIV

A0A5A7TGZ1 Pre-mRNA-splicing factor SF27.3e-2779.01Show/hide
Query:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL
        MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALL
Subjt:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL

A0A5D3C3G3 Pre-mRNA-splicing factor SF27.3e-2779.01Show/hide
Query:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL
        MSIAIIHRDIEREWE+H            TC+LSEELCTAK LE MRRYKIYFNIIIPLEHLGANEQWNCGA+LTSRIALL
Subjt:  MSIAIIHRDIEREWENH-----------YTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTATACTTGCACACTCTCAGAAGAGCTATGCACTGCTAA
AATTTTGGAGTGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACAGCTCACATCGAGGA
TTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTATACTTGCACACTCTCAGAAGAGCTATGCACTGCTAA
AATTTTGGAGTGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCAAATGAGCAATGGAATTGTGGAGCACAGCTCACATCGAGGA
TTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGA
Protein sequenceShow/hide protein sequence
MASAWTNMSIAIIHRDIEREWENHYTCTLSEELCTAKILEWMRRYKIYFNIIIPLEHLGANEQWNCGAQLTSRIALLVCFIVFGSALF