CuGenDBv2

Gene ID	Sed0019125
Organism	Sechium edule (Chayote v1)
Description	PMD domain-containing protein
Genome location	LG04:21848575..21849366
RNA-Seq Expression	Sed0019125
Synteny	Sed0019125
Gene Ontology terms	NA
InterPro domains	IPR019557 - Aminotransferase-like, plant mobile domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025356.1 hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]

2.1e-79

54.23

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA   ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S    SY +S+ SCYLS+R  +  II  Y PY+  RQFGF+QD+P D+ G  P+ +LDNIL+HWRICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KHG YFE N   LV S +P  S+ +LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

KAA0042070.1 hypothetical protein E6C27_scaffold67G005320 [Cucumis melo var. makuwa]

3.3e-77

53.52

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        +A G ++SLAVP LAN+YHGLG+IT+ASN IGR+D   PMH++H WLA+YF TH+ +P ++RG +M +F  EGG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         +NKHE + D  + S   +SY +S+RSCYL +R G+  II  Y  YR G QF FFQD+P D+E   P+ + DN+LHHWRICT+  T + ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPE
          V+QR+  WW  +HG YFE N+  LV SV+P  S+PKLPK  G N GGK+IRL E
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPE

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

3.6e-84

56.15

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FS EGG I+F EYEARELIH+G  I W  ++ 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S   +SY +S+RSCYLS+R  +  II  Y PYR GRQFGF+QD+P D+ G  P+ +LDNIL+HWRICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KHG YFE N   LV S +P SS+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]

1.5e-77

53.46

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGL +I +ASNPI R+D   PMH++HGWLA+YF TH+ +  ++RG +M +FSG GG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S    SY +S+RSCYLS+R  +  II  Y  YR GRQFGF+QD+P D+ G  P+ +LDNIL+H RICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+Q++  WW  KHG YFE N   LV SV+P+ S+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

KAA0053466.1 hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]

4.7e-84

56.15

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P+++RG +M +FSGEGG I+F EYEARELIH+G  I W   +H
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         RNKHE + D  + S    SY +S+RSCYLS+R  +  II  Y PYR GRQFGF+QD+P D+ G  P+ +LDNIL+HWRIC +  T S ++LP RSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KH NYFE N   LV S +P  S+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SHN8 PMD domain-containing protein

1.0e-79

54.23

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA   ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S    SY +S+ SCYLS+R  +  II  Y PY+  RQFGF+QD+P D+ G  P+ +LDNIL+HWRICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KHG YFE N   LV S +P  S+ +LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

A0A5A7TX42 Uncharacterized protein

1.8e-84

56.15

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FS EGG I+F EYEARELIH+G  I W  ++ 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S   +SY +S+RSCYLS+R  +  II  Y PYR GRQFGF+QD+P D+ G  P+ +LDNIL+HWRICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KHG YFE N   LV S +P SS+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

A0A5A7U8L3 PMD domain-containing protein

7.2e-78

53.46

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGL +I +ASNPI R+D   PMH++HGWLA+YF TH+ +  ++RG +M +FSG GG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         R+KHE + D  + S    SY +S+RSCYLS+R  +  II  Y  YR GRQFGF+QD+P D+ G  P+ +LDNIL+H RICT+  T S ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+Q++  WW  KHG YFE N   LV SV+P+ S+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

A0A5A7UGW6 PMD domain-containing protein

2.3e-84

56.15

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        MA G ++SLAVP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P+++RG +M +FSGEGG I+F EYEARELIH+G  I W   +H
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         RNKHE + D  + S    SY +S+RSCYLS+R  +  II  Y PYR GRQFGF+QD+P D+ G  P+ +LDNIL+HWRIC +  T S ++LP RSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP
          V+QR+  WW  KH NYFE N   LV S +P  S+P+LPK  G N GGK+IRL E   P
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPP

A0A5D3D2A0 PMD domain-containing protein

1.6e-77

53.52

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Query:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH
        +A G ++SLAVP LAN+YHGLG+IT+ASN IGR+D   PMH++H WLA+YF TH+ +P ++RG +M +F  EGG I+F EYEARELIH+G  I W   + 
Subjt:  MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIH

Query:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR
         +NKHE + D  + S   +SY +S+RSCYL +R G+  II  Y  YR G QF FFQD+P D+E   P+ + DN+LHHWRICT+  T + ++LPARSL   
Subjt:  GRNKHEEITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLR

Query:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPE
          V+QR+  WW  +HG YFE N+  LV SV+P  S+PKLPK  G N GGK+IRL E
Subjt:  DQVSQRYKRWWLAKHGNYFEYNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G32120.1 FUNCTIONS IN: molecular_function unknown

1.6e-05

35.56

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Query:  LMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLRDQVSQRYKRWW
        +++   C   A+   L  IEPY P+R+  QFG+ QDVP    G VP A ++     W+   +      ++ PAR LH  D V+  Y RWW
Subjt:  LMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLRDQVSQRYKRWW

AT5G18510.1 Aminotransferase-like, plant mobile domain family protein

5.2e-04

25.89

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Query:  ITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLRDQVSQRY
        +T + ++    +S+   ++  YL+        +E Y PYR+ RQFG  QD+P    G V           W   + +     ++LP++    R  V+ RY
Subjt:  ITDNQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLRDQVSQRY

Query:  KRWWLAKHGNYF
        + WW      YF
Subjt:  KRWWLAKHGNYF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGAGGGTCATGTCTTTAGCCTTGCTGTCCCAACCTTAGCTAACTTATACCATGGATTAGGTATAATCACTCGGGCTTCTAACCCGATCGGACGTGTAGACGTTTG
TTTGCCTATGCACTTCATTCATGGATGGCTTGCTTATTATTTCAAAACACATTTTGAAGTTCCAAAGAAAATTCGAGGTGCTCGAATGGTTGATTTCTCCGGTGAAGGTG
GTGTCATACATTTTGATGAGTACGAAGCTCGAGAATTGATTCATCATGGAGGATCTATCGCATGGGGTGTAACTATTCATGGAAGAAATAAACATGAAGAAATAACAGAT
AATCAGAATATATCATCCTTCGATTCTTCATATCTCATGAGCCTTCGATCGTGCTACTTATCTGCTAGATTTGGTGATTTAATGATCATTGAACCCTACGACCCTTATCG
AATTGGGCGACAATTCGGATTTTTTCAAGATGTCCCATATGACTTAGAAGGTAGTGTTCCATCGGCCAGTCTTGATAATATCTTACATCATTGGAGGATTTGTACAAAAA
CCAGAACAACATCTCGAGTTCATTTGCCGGCTCGATCACTACATTTACGGGATCAAGTCTCTCAACGATATAAAAGATGGTGGCTAGCGAAGCACGGTAATTATTTCGAA
TATAATGTGGTAAAATTAGTAGGAAGTGTTATGCCTACTTCATCCAAACCCAAGCTCCCCAAAGGAAACGGAGGAAATCATGGTGGAAAGCAAATCCGTTTACCTGAAGA
AGAACCCCCAGCTCCAAAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAEGHVFSLAVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEVPKKIRGARMVDFSGEGGVIHFDEYEARELIHHGGSIAWGVTIHGRNKHEEITD
NQNISSFDSSYLMSLRSCYLSARFGDLMIIEPYDPYRIGRQFGFFQDVPYDLEGSVPSASLDNILHHWRICTKTRTTSRVHLPARSLHLRDQVSQRYKRWWLAKHGNYFE
YNVVKLVGSVMPTSSKPKLPKGNGGNHGGKQIRLPEEEPPAPK

Sed0019125 (gene) of Chayote v1 genome