; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0019131 (gene) of Chayote v1 genome

Gene IDSed0019131
OrganismSechium edule (Chayote v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationLG04:1400603..1405053
RNA-Seq ExpressionSed0019131
SyntenySed0019131
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]4.7e-8294.44Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKE R+SN GSALNASLDTA RE DTLKFPLVNGANI SSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
        GW EPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
Subjt:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-8292.5Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKE RTSNGSA NASLDT IREPDTLKFPL NGANI SSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFF
        W EPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGKSCFF
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFF
XP_022132228.1 uncharacterized protein LOC111005141 isoform X1 [Momordica charantia]5.3e-7888.96Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KE R+SNGS LNASLDTAIREPDTLKFPLVNGANI SSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG-KSCFFSR
        W EP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA    C F+R
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG-KSCFFSR
XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]3.1e-7892.21Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKE RTSNGSA NASLDT IREPDTLKFPL NGANI SSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        W EPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]1.8e-7892.21Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKE RTSNGSA NASLDT IREPDTLKFPL NGANI SSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        W EPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881219.8e-7893.55Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKE R+SN GSALNASLDTA RE DTLKFPLVNGANI SSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        GW EPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKNSILSA+GNINDSFSA
Subjt:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A2.3e-8294.44Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKE R+SN GSALNASLDTA RE DTLKFPLVNGANI SSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEARTSN-GSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
        GW EPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
Subjt:  GWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFS
A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X12.6e-7888.96Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KE R+SNGS LNASLDTAIREPDTLKFPLVNGANI SSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG-KSCFFSR
        W EP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA    C F+R
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG-KSCFFSR
A0A6J1GID2 uncharacterized protein LOC1114544871.5e-7892.21Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKE RTSNGSA NASLDT IREPDTLKFPL NGANI SSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        W EPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
A0A6J1KME1 uncharacterized protein LOC1114959318.9e-7992.21Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKE RTSNGSA NASLDT IREPDTLKFPL NGANI SSSRRV+RKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        W EPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein1.3e-1048Show/hide
Query:  SGSES------DDSDWSIGWCEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG
        SGSES      D  +WS+GW EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+ +    G
Subjt:  SGSES------DDSDWSIGWCEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG
AT4G38060.2 unknown protein1.7e-1051.47Show/hide
Query:  SGSES------DDSDWSIGWCEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI
        SGSES      D  +WS+GW EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+
Subjt:  SGSES------DDSDWSIGWCEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI
AT5G65480.1 unknown protein1.2e-1433.79Show/hide
Query:  MSVAFPQLSWWLWSGKHKEARTSNGSAL--NASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWS
        M+V+FP+L  WL  G + + R    S    ++SL  ++++  T K       +  SS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MSVAFPQLSWWLWSGKHKEARTSNGSAL--NASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILS
        IGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  IGWCEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAGGAAGCTCGAACCTCCAATGGGTCTGCTTTAAATGCTTCCTTAGATACAGCCATTCG
GGAACCAGATACTCTAAAATTTCCCTTAGTTAATGGTGCCAACATACCATCCTCGTCTAGAAGAGTGAAGCGAAAATGGCATAGTCGAGAAGAGAGGAAAGTTGATAGAG
AATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCAGGGTCCGAATCTGATGATTCAGACTGGTCAATTGGATGGTGCGAACCACATGGACCTGGATTCCAG
AGTGACGATGATACCGACAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGATGAAACTAAGAACAGTATCCTAAGTGCTGTTGGGAA
TATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTTTCAAGATAG
mRNA sequenceShow/hide mRNA sequence
CTGGAGCAGCATCAAAGCGTTTCGACTGTGCCAAAAGGCATTTCATTCTATCTTCTTCAATTTTGCGAATCGCGGCTCTTCTCTGGCGATCAATTGGCTGAAAATGTTCG
GTGTTCGATTTGAGTTCTTCGGCATTTGAATCGTTCATCTGTAGAATCCGTCGCCATTGGAGTTTTGCTTTGAGTGATTTGTTCGTTTAGGTATAGCTATTTCTTTGTTT
CTTCAGCTTTAGTTTTTTTGCTTTTTCATTATGATTGTGGCTCTTCTCTGGCGATCGATTGGCTGAAAATTTTCGGTGTTCGATTTGAGTTCTTCGGCATTTGAATCATT
CATCTGTAGAATCCGTAGCCATTGGTGCATTGCTTTGAGTGATTTGTTCATTTAGGTATAGCTATTTCTTTGTTTCTTCAGCTTTAGTTTTTTTGCTTGATTGTGGCTCT
TCTCTGGCGATCAATTGGCTAAAGTTTTCGGCGTTCGATTTGAGTTCTTCGGCATTTGAATCGTTCATCTGTACAATCCGTAGCCATTGGAGCTTTGCTTTGAGAGATTT
GTTCGTTTAGGAAAAATCTGCTCCAATTCACATCTCTGGCCATAGAATTTACATGTAGTTAGCCAGTATTTCTTTGGAGGGACTTGGTATTACCATATTCGTTAGTAAAG
AAAATTGAAACCACACATGTCTGTGGCATTTCCCCAACTCTCATGGTGGTTATGGAGTGGGAAGCATAAGGAAGCTCGAACCTCCAATGGGTCTGCTTTAAATGCTTCCT
TAGATACAGCCATTCGGGAACCAGATACTCTAAAATTTCCCTTAGTTAATGGTGCCAACATACCATCCTCGTCTAGAAGAGTGAAGCGAAAATGGCATAGTCGAGAAGAG
AGGAAAGTTGATAGAGAATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCAGGGTCCGAATCTGATGATTCAGACTGGTCAATTGGATGGTGCGAACCACA
TGGACCTGGATTCCAGAGTGACGATGATACCGACAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTACAATGATTTTGTGGATGAAACTAAGAACAGTATCC
TAAGTGCTGTTGGGAATATCAATGATAGCTTTTCTGCTGGTAAGAGTTGTTTCTTTTCAAGATAGTGTTTTGATTGGTATTGGGTGTTAGTTATTGCTTTGGCCTTTCAT
AATATTCTTCTAGTCCTCTTTTGTGAATAGTTAACTCAATAACTTCGTTCATATCCTATGATAGCTTAGTTTCTTATTTAGAATCGATTTATGCACTCTTCAACTATTTG
TATGAGACAGATTGTCTGACCTTCCAATATTTGGCTATCTAGTAAACTTGTAGGAAATTAATTCCTAAATTGGATTAGCTCTCAAATCTCTAAGACCCTCTTTAACTACT
AGACCAATTCATAATGGTTGAGTCGAGTTACCGGTATTCGGAAGAATGAAAATTCTAAATCTTTGATGTAGTTTAGGTAGATGATGCTATTTCCTTTTCTGATTCATGCT
CGTAGTCGTAGGAAGGAATTGTAAAACTTACGAGAATTATATTCTATTATTTTGAGCCTTTACGGCCAATTTACAGAATTGAAAAGAAATCTTCCTTGTTCTTATTGATT
TTATACTGGCTTCATATTGTATGATTGGCCTGTCTCAAAGGGTGACTTCATTGATAGAAGACTCAAGTTCGAAACTTATAAATGAGCTTAATTATAAAATTTATTGTTGT
GTTCCAAGTTTAGACCTTTGGGACGTGTGCGTGTGCACTCGGATCTGTATGAGGCAAAGCTTTGATTCTTTGGTTATCAAAAGAAATATTGTATGATTGTTCTTCTTGCG
AATGGGAATAAATTAAAAACTACATGTGAAATTTATTTTTTGGTAGCTTTTTGTTCGTTTGAAGCTGATTGTCTGCACTTTTTCATGGATCAGAGAGCAAGAAATATATG
GAACAATGGCTGTCCTCTCTTCAGAGTTGCTAAAGCACAGGATTTATAGTTGCATGCATAGCTCATGCTCTGTTTCCAAGAAGAAGACATTTTGTGATATCTATCCATTT
AAAAAAAAAATTTAAAAAGAAAAAAGGAAAAAGATTATAGAAGAGTATCTATTCTGGCTTCATTTGATATAAAACTAAGAAGCTAATTGGATGAAAAGAATGGATCCAAG
CAGGGTTTAAGAAGAGAGACTTAAACAATGACCTCATCTGAGATGAAGCCTGTTAAAATGGCATGTAAATATGGAAGGGAGAAAGGTGGAAAAACCTTATTGTCTCCAAG
GTCTGGCACTTGAAACGGGCACCGGTGCCTCCAAATATATAGTGGGGTGAAACTCTGATTCCTGGCTATCCAAACAAAGATGTACATACTTTGAGTTACTTTATAAATAT
GGATGGGAGAAAGGTGGAAAAAGTTGGTTGTCTCTCAAGTCTTAGTCTTAGGACGGTGCGAGTGCCCGGGTACATAGTGAGACAGATTTCTTTACAAATATGGAAAGAAG
AAAGGAGGAAAAGCTTGAGCAAACTAGCTGGGTTTTGAAGAAAAAGAGTTGATGGAAGTGCATGTGCCTTGTAATTTTTTGAAGTGTTCAGTTCGTGTAAAAAGTGGCGA
GCGTTAAATTCTCCTGATGTTGCTGTAAATAGCGACTTGATTGTTCGAGTCATGTAAATATGATCTGAGTGGGTTTGGTTCATCTCTATAAATGGTGACTCATTTGTAAA
ATTTGTTGTACAAAGTAACACAGTTGTGCAGGCTTGTAAATGTCTCTCCCTGTTCAATGTAATATTCTTTATATATAAGCATTAAAGCCTATGTATTACTAATAGTTTCT
ATTCTTTTTCTTCTTTTTTTCGGAGAAAATGTATCACTATTAGTTGTTTGTAATGTGAAAGATAAGTTTGTTATTA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWLWSGKHKEARTSNGSALNASLDTAIREPDTLKFPLVNGANIPSSSRRVKRKWHSREERKVDREYDIVLVPSDGGCVSGSESDDSDWSIGWCEPHGPGFQ
SDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKSCFFSR