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Sed0019140 (gene) of Chayote v1 genome

Gene IDSed0019140
OrganismSechium edule (Chayote v1)
DescriptionK-box region and MADS-box transcription factor family protein
Genome locationContig00107:43149..43508
RNA-Seq ExpressionSed0019140
SyntenySed0019140
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046436.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-6198.32Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVW LGGWVAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

PWA94828.1 hypothetical protein CTI12_AA016510 [Artemisia annua]9.4e-4884.03Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVW LGG  + ++ LS    +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

YP_009305182.1 hypothetical protein HESP_p38 [Hesperelaea palmeri]1.2e-4785.47Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVW L      R +LSFSSTQGGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKR
        NHSGPGR    S+  KR
Subjt:  NHSGPGRGGDHSQEPKR

YP_009974684.1 hypothetical protein JAA21_mgp17 [Helianthus grosseserratus]1.3e-4985.71Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVDSWVW LGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

YP_009974724.1 hypothetical protein I9989_mgp20 [Helianthus strumosus]5.0e-4984.87Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKVDSWVW LGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

TrEMBL top hitse value%identityAlignment
A0A2U1Q9Z6 Uncharacterized protein4.6e-4884.03Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVW LGG  + ++ LS    +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A5A7TWJ9 Reverse transcriptase9.5e-6298.32Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVW LGGWVAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7G8JSU7 Uncharacterized protein6.4e-5085.71Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVDSWVW LGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7G8JSY7 Uncharacterized protein2.4e-4984.87Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKVDSWVW LGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7N0RCK1 Uncharacterized protein6.0e-4885.71Show/hide
Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRT TCTECSYGKV S VW  GG  + ++ LS    +GGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATA
CGGGAAAGTTGACTCCTGGGTCTGGTACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAG
GTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGAC
CATTCTCAAGAACCAAAAAGACTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATA
CGGGAAAGTTGACTCCTGGGTCTGGTACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAG
GTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGAC
CATTCTCAAGAACCAAAAAGACTGAGCTGA
Protein sequenceShow/hide protein sequence
MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWYLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGD
HSQEPKRLS