CuGenDBv2

Gene ID	Sed0019180
Organism	Sechium edule (Chayote v1)
Description	coiled-coil domain-containing protein 12-like
Genome location	LG01:13254423..13257694
RNA-Seq Expression	Sed0019180
Synteny	Sed0019180
Gene Ontology terms	GO:0005684 - U2-type spliceosomal complex (cellular component) GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
InterPro domains	IPR013169 - mRNA splicing factor Cwf18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572999.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-65

88.96

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFRNYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

KAG6584286.1 Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-65

89.54

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATE++SVEQVAAARKERLRAL+AAQELLN  DEK++GGEDKENGAT D EETNLSMKFRNYVPHDKELQEGKL PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN+TE
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE

XP_022955111.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata]

3.8e-65

88.96

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFRNYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

XP_023542240.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo]

2.6e-66

90.26

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Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGEDKENGA AD EETNL MKFRNYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

XP_038894163.1 coiled-coil domain-containing protein 12 [Benincasa hispida]

4.9e-65

89.61

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Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAARKERLRAL+AAQELLNA DEK++GGEDKENGATADAEETNL+MKFRNYVPHDKELQEGKL+PPVLPKFEDPV TEP Q KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN  EG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3ATB1 coiled-coil domain-containing protein 12

8.5e-63

86.27

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+S EQVAAARKERL+AL+AAQELLNA DEK++ GEDKENGATAD +ETNL+MKFRNYVPHDKELQEGKL+PPVLPKFEDPV TEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQ+AEGDDDQN  E
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE

A0A6J1DLK0 coiled-coil domain-containing protein 12 isoform X1

3.8e-63

86.36

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAARKERLRAL+AAQELLN PDEK++GGEDK+NG   D EETNLSMKFRNYVPHDKELQEGKL+PPVLPKFEDPVA EPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLM+EQEK+K+SAEGDD QN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

A0A6J1E719 coiled-coil domain-containing protein 12-like

1.3e-63

87.82

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGAT---ADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDT
        MATE++SVEQVAAARKERLRAL+AAQELLNA DEK++GGEDKENGAT    D EETNLSMKFRNYVPHDKELQEGKL PP LPKFEDPVATEPPQ KED 
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGAT---ADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDT

Query:  LVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE
         VNIAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN+TE
Subjt:  LVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTE

A0A6J1GST8 coiled-coil domain-containing protein 12-like

1.8e-65

88.96

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAAR+ERLRAL+AAQELLNAPDEK++GGED+ENGA AD EE NL MKFRNYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

A0A6J1JYP1 coiled-coil domain-containing protein 12-like isoform X1

3.1e-65

88.31

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN
        MATEE+SVEQVAAAR+ERLRAL+ AQELLNAPDEK++GGED+ENG  AD EETNL MKFRNYVPHDKELQEGKL+PPVLPKFEDPVATEPPQ KED  VN
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVN

Query:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG
        IAPKKPNWDLRRDVQKKLDKLERRTQKAL+KLMEEQEK+KQSAEGDDDQN TEG
Subjt:  IAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

SwissProt top hits

e value

%identity

Alignment

Q8R344 Coiled-coil domain-containing protein 12

6.6e-12

Show/hide

Query:  VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG------ATADAEET--NLSMKFRNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--
        +E+ A  RKERL+AL+           + TG +D+E+G         + EE   +  ++ RNYVP D++L+  ++  + PV    K ++ +    P+P  
Subjt:  VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG------ATADAEET--NLSMKFRNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--

Query:  KEDTLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSA
        +E  L N+AP+KP+WDL+RDV KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDTLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSA

Q8WUD4 Coiled-coil domain-containing protein 12

3.8e-12

35.33

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Query:  VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG--------ATADAEETNLSMKFRNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--
        +E+ A  RKERL+AL+           + TG +DKE+G           +  E +  ++ RNYVP D++L++ ++  + PV    K ++ +    P+P  
Subjt:  VEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENG--------ATADAEETNLSMKFRNYVPHDKELQEGKL--SPPVL--PKFEDPVATEPPQP--

Query:  KEDTLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSA
        +E  L N+AP+KP+WDL+RDV KKL+KL++RTQ+A+ +L+ E+ K ++ +
Subjt:  KEDTLVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSA

Arabidopsis top hits

e value

%identity

Alignment

AT3G05070.1 CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).

2.8e-42

66.22

Show/hide

Query:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPP--QPKEDTL
        MA+E+ES+EQ AAARKE L+AL+AAQEL           E KE+G     EE   +MKFRNYVP  KELQ+GKL+PP LPKFEDP+   PP  + KED  
Subjt:  MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPP--QPKEDTL

Query:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGD
        VNIAPKKPNWDLRRDVQKKLDKLERRTQKA+ KLMEEQEKE++ AE D
Subjt:  VNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGD

Sequences

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CDS sequence

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ATGGCTACTGAGGAAGAATCTGTTGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTGAAAGCTGCTCAAGAATTGTTAAACGCTCCAGATGAGAAAAGTAC
TGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATGCCGAAGAAACTAATCTTAGTATGAAATTTCGAAATTATGTTCCTCATGATAAAGAGCTTCAGGAGGGTAAGC
TTTCCCCACCTGTGTTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACCAAAAGAGGACACACTTGTAAATATTGCTCCAAAGAAACCAAACTGGGACCTC
AGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATTCAAGCTTATGGAGGAACAAGAAAAGGAAAAGCAGTCAGCTGAAGGAGATGA
TGACCAAAATGTTACAGAGGGATAG

mRNA sequence

Show/hide mRNA sequence

CTTTGACGCAAGAAATACTCCATTTCCTTCATTCCGCCATTGCTCGAAGCTTGTAAAGAAACTGTTGCGACTACAACTTTGTGAAAGAAATTGTAATTCCTCTTGAGTTT
TTCTATATTTTACGTTCTATAGGCAATGGCTACTGAGGAAGAATCTGTTGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTGAAAGCTGCTCAAGAATTGT
TAAACGCTCCAGATGAGAAAAGTACTGGAGGAGAGGATAAAGAGAATGGTGCTACTGCAGATGCCGAAGAAACTAATCTTAGTATGAAATTTCGAAATTATGTTCCTCAT
GATAAAGAGCTTCAGGAGGGTAAGCTTTCCCCACCTGTGTTGCCGAAGTTTGAGGACCCTGTTGCTACTGAACCTCCACAACCAAAAGAGGACACACTTGTAAATATTGC
TCCAAAGAAACCAAACTGGGACCTCAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATTCAAGCTTATGGAGGAACAAGAAAAGG
AAAAGCAGTCAGCTGAAGGAGATGATGACCAAAATGTTACAGAGGGATAGTATGCTCTACACAAAGTTATGACCCAAAATGCTAATATTCACTACTACTCCCACATGCTT
TGAGAAATTTGTCACTGAAGAAAAAATGGTCAGTTTTTCTGATTATTCTTGGCTGCAAATCTTTAGTTTTATATTCTGTGCCTTATGGTGTCTCTTACTGATAGTGATTT
GTAATTTACCTACACTACTAGCTTAAACTAACTTTGTATTTCACTTATGATCTTCAATTATGAACCATTTTTTCCCCTTTTAAACTGAGTTTATAATTATGCACATTAAC
TTCGC

Protein sequence

Show/hide protein sequence

MATEEESVEQVAAARKERLRALKAAQELLNAPDEKSTGGEDKENGATADAEETNLSMKFRNYVPHDKELQEGKLSPPVLPKFEDPVATEPPQPKEDTLVNIAPKKPNWDL
RRDVQKKLDKLERRTQKALFKLMEEQEKEKQSAEGDDDQNVTEG

Sed0019180 (gene) of Chayote v1 genome