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Sed0019207 (gene) of Chayote v1 genome

Gene IDSed0019207
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG12:8369824..8370183
RNA-Seq ExpressionSed0019207
SyntenySed0019207
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381178.1 uncharacterized protein LOC107174642 [Citrus sinensis]1.7e-0938.1Show/hide
Query:  GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGG
        GW  P     KVNVDAT+ S +GR GIGV+ RNS G  M +    +I     E  EAVAV  G+ L  ++G   V +++D+  V  ++ ++   R EVG 
Subjt:  GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGG

Query:  LLMNL
        L+ ++
Subjt:  LLMNL

XP_021766484.1 uncharacterized protein LOC110730920 [Chenopodium quinoa]1.3e-0936.08Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEV
        WIPP+  I K+N+DA + S++G+  +G++ R+ +GD + S  KP+  +     AEA A   G+  A++ GFR++E+ TD   +  +L+S+S  R  V
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEV

XP_023872391.1 uncharacterized protein LOC111985003 [Quercus suber]2.3e-0938.46Show/hide
Query:  PPMGWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALML
        P + W PP     K+N+D  + ++ G  G+GV+ RN  G  M +  K     L A   EA+AV++GI LAW+LG +++E+E+D+Q V   L
Subjt:  PPMGWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALML

XP_023880097.1 uncharacterized protein LOC111992470 [Quercus suber]1.7e-0941.76Show/hide
Query:  HPPM---GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAV
        HPP+    W+PP     K+N D  + S+ G  GIGV+ RN  G  M S  K I   L A   EA AV +G+ LAW+LG +++ LE+D+ +V
Subjt:  HPPM---GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAV

XP_023927486.1 uncharacterized protein LOC112038880 [Quercus suber]7.8e-1037.5Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGGL
        W PP    VKVN D  + SQ+G  GIGVI RN  G  M +  + I      E  E +A R  ++ A ELGF +VELE D+++V   +      R  +G +
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGGL

Query:  LMNL
        L ++
Subjt:  LMNL

TrEMBL top hitse value%identityAlignment
A0A2N9HTD1 Uncharacterized protein3.2e-0935.58Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGGL
        W  P   IVK+N D     Q+  TGIGVI R+S G  +        G+  AE  EA+A+++G +LA E+G   + +E+D Q V L +QS+ +    VG +
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEVGGL

Query:  LMNL
        + ++
Subjt:  LMNL

A0A6A2Y989 Protein NRT1/ PTR FAMILY 2.73.2e-0938.32Show/hide
Query:  GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRME---
        GWI P  D +KVNVD   C       IGV+ R+S+G  +    K I     AE+AE VA  +GI LA+E G+ RV +E D  ++   L ++  G+++   
Subjt:  GWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRME---

Query:  VGGLLMN
          GLL+N
Subjt:  VGGLLMN

A0A7C8ZSU5 Uncharacterized protein3.2e-0942.39Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSF
        W PP   IVK+N DA++ S E R G+G + R+  G  + S C  ++G   AE++E  AVR G+ +A  LGF  V LETD   VA  L S+++
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSF

A0A7N2LIH6 Uncharacterized protein1.3e-1043.18Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQ
        W PP+ D  KVNVDA +  ++G  GIGV+ RN+ G  M +  K ++  L A  AEA A   GI+LAW+LG + + +E D Q V   L+
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQ

A0A803KV00 Uncharacterized protein6.4e-1036.08Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEV
        WIPP+  I K+N+DA + S++G+  +G++ R+ +GD + S  KP+  +     AEA A   G+  A++ GFR++E+ TD   +  +L+S+S  R  V
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRMEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.2e-0934.44Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSR
        W  P  + VK N D +  +    +G+  I RNS G C+   C    G    + AE  A+   I  AW+LG+RRVE E DN  V  +++++
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSR

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.2e-0531.18Show/hide
Query:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSF--CKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRS
        W PP   +VK+N+  T       T    I R+  G  +F +  C   I E+V   A  +A+  G+   W+ GFRR+ LET +  +   L ++S
Subjt:  WIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSF--CKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTGGGTGGGAAGGCTATTCGGCATCATCCTCCTATGGGTTGGATCCCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAACAATTTGTAGTCAGGAGGG
AAGGACCGGAATCGGGGTAATCACACGAAATTCTTATGGGGATTGTATGTTTTCTTTTTGCAAACCTATCATTGGGGAGTTAGTGGCTGAAGCTGCAGAAGCCGTGGCTG
TTCGTGATGGAATTATGTTGGCGTGGGAGTTGGGGTTCAGACGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTTATGCTTCAATCACGATCTTTTGGGCGAATG
GAGGTGGGGGGATTATTGATGAATCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTGGGTGGGAAGGCTATTCGGCATCATCCTCCTATGGGTTGGATCCCGCCTATTGGTGATATAGTTAAAGTTAATGTTGATGCAACAATTTGTAGTCAGGAGGG
AAGGACCGGAATCGGGGTAATCACACGAAATTCTTATGGGGATTGTATGTTTTCTTTTTGCAAACCTATCATTGGGGAGTTAGTGGCTGAAGCTGCAGAAGCCGTGGCTG
TTCGTGATGGAATTATGTTGGCGTGGGAGTTGGGGTTCAGACGGGTTGAGTTGGAAACTGATAATCAAGCGGTTGCCCTTATGCTTCAATCACGATCTTTTGGGCGAATG
GAGGTGGGGGGATTATTGATGAATCTTTGA
Protein sequenceShow/hide protein sequence
MGLGGKAIRHHPPMGWIPPIGDIVKVNVDATICSQEGRTGIGVITRNSYGDCMFSFCKPIIGELVAEAAEAVAVRDGIMLAWELGFRRVELETDNQAVALMLQSRSFGRM
EVGGLLMNL