CuGenDBv2

Gene ID	Sed0019222
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Genome location	LG07:8538430..8542821
RNA-Seq Expression	Sed0019222
Synteny	Sed0019222
Gene Ontology terms	GO:0006383 - transcription by RNA polymerase III (biological process) GO:0006412 - translation (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0005829 - cytosol (cellular component) GO:0005840 - ribosome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007811 - DNA-directed RNA polymerase III subunit RPC4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]

1.4e-99

64.04

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Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN
        MKN D  PPRRK+KF P    R+ PPP P  KTEDEDG+    QTRYLLRRA ENLGKR N+VE+KSSVQVAFGPGA S+SSSIR+YG+PK  +  +KN+
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN

Query:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE
        IE +  +DE+ +  +  DV EDGK FD K +DGIA+    S++A+ TKTK+DYKEPWDY +SYYPTTLP+R PYSGDPE L+EAEFG DAMN++YDE++ 
Subjt:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE

Query:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        +PALDLGL +EN ENTKYFFQLP+RLPLPKQSS+ATGKEKVG+SRSSNST +S+L DL KL  GC+GKLLIYKSGA+KL +GDIL+DVS  +  SFL+  
Subjt:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  IG
Subjt:  LSSLLFLLSCCEIKHIG

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]

1.7e-100

64.35

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Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN
        MKN DP PPRRK+KF P    RK PPP P  KTEDEDG+    QTRYLLRRA ENLGKR N+VEKKSSVQVAFGPGA S+SSSIR+YG+PK  +  +KN+
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN

Query:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE
        IE +  +DE+ +  + +DV EDGK FD K +DGI +    S++A+ TKTK+DYKEPWDY +SYYPTTLP+R PYSGDPE L+EAEFG D MN++YDE++ 
Subjt:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE

Query:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        +PALDLGLL+EN E+TKYFFQLP+RLPLPKQSS+ATGKEKVG+SRSSNST +S+L DL KL  GC+GKLLIYKSGA+KL +GDIL+DVS  +  SFL+  
Subjt:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  IG
Subjt:  LSSLLFLLSCCEIKHIG

XP_022141050.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Momordica charantia]

1.8e-102

66.88

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Query:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI
        MKNPDP   PRRK+KF P   PRK PPPAPK EDEDG++N+ QTRYLLRRATENLGKRG +VEKK SVQVAFGPG AS+SSSIR+YG+PK G+S +KNNI
Subjt:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI

Query:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV
        E + SDDE+SI  LP DVEEDG +FD K EDG  + A+ +NA + TK KKDY+EPWDYH SYYP TLP+R PYSG PELL++AEFG DA +++YDE+A +
Subjt:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV

Query:  PALDLGLL-EENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        PALDL LL EE  E T YFFQLP+ LPLPKQSS+AT KEKVGSSRSSNS  TSELGDL KLPGG +GKLLIYKSGAVKL +G+ L+DVS  +  SFL+  
Subjt:  PALDLGLL-EENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  +G
Subjt:  LSSLLFLLSCCEIKHIG

XP_022141051.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charantia]

7.2e-104

67.09

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Query:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI
        MKNPDP   PRRK+KF P   PRK PPPAPK EDEDG++N+ QTRYLLRRATENLGKRG +VEKK SVQVAFGPG AS+SSSIR+YG+PK G+S +KNNI
Subjt:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI

Query:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV
        E + SDDE+SI  LP DVEEDG +FD K EDG  + A+ +NA + TK KKDY+EPWDYH SYYP TLP+R PYSG PELL++AEFG DA +++YDE+A +
Subjt:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV

Query:  PALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKL
        PALDL LLEE  E T YFFQLP+ LPLPKQSS+AT KEKVGSSRSSNS  TSELGDL KLPGG +GKLLIYKSGAVKL +G+ L+DVS  +  SFL+  +
Subjt:  PALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKL

Query:  SSLLFLLSCCEIKHIG
        +       CC++  +G
Subjt:  SSLLFLLSCCEIKHIG

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]

4.0e-102

65.71

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Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNIE
        MKNPD  PPRRK+KF P   PR+ PPP  K EDEDGD    QTRYLLRRATENLGKRGN+V++KSSVQVAFGPG AS+SSSIR+YG+PK  +S +KN+IE
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNIE

Query:  LQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVP
            +DE+ I  LP DVEE+GK+FD K +DGIA+    S++AI TKTKKDYKEPWDYH+S YPTTLP+R PYSGDPE L+EAEFG DA +++YDE + +P
Subjt:  LQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVP

Query:  ALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKLS
        ALDLGLL+E  ENTKYFFQLP+RLPLPKQSS+ATGKEKVG+ RSS S  +SELGDL KL  GC+GKLLIYKSGA+KL +GD L+DVS  +  SFL+  ++
Subjt:  ALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKLS

Query:  SLLFLLSCCEIKHIG
               CC++  IG
Subjt:  SLLFLLSCCEIKHIG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZ61 Uncharacterized protein

8.1e-101

64.35

Show/hide

Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN
        MKN DP PPRRK+KF P    RK PPP P  KTEDEDG+    QTRYLLRRA ENLGKR N+VEKKSSVQVAFGPGA S+SSSIR+YG+PK  +  +KN+
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN

Query:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE
        IE +  +DE+ +  + +DV EDGK FD K +DGI +    S++A+ TKTK+DYKEPWDY +SYYPTTLP+R PYSGDPE L+EAEFG D MN++YDE++ 
Subjt:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE

Query:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        +PALDLGLL+EN E+TKYFFQLP+RLPLPKQSS+ATGKEKVG+SRSSNST +S+L DL KL  GC+GKLLIYKSGA+KL +GDIL+DVS  +  SFL+  
Subjt:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  IG
Subjt:  LSSLLFLLSCCEIKHIG

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like

6.8e-100

64.04

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Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN
        MKN D  PPRRK+KF P    R+ PPP P  KTEDEDG+    QTRYLLRRA ENLGKR N+VE+KSSVQVAFGPGA S+SSSIR+YG+PK  +  +KN+
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN

Query:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE
        IE +  +DE+ +  +  DV EDGK FD K +DGIA+    S++A+ TKTK+DYKEPWDY +SYYPTTLP+R PYSGDPE L+EAEFG DAMN++YDE++ 
Subjt:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE

Query:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        +PALDLGL +EN ENTKYFFQLP+RLPLPKQSS+ATGKEKVG+SRSSNST +S+L DL KL  GC+GKLLIYKSGA+KL +GDIL+DVS  +  SFL+  
Subjt:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  IG
Subjt:  LSSLLFLLSCCEIKHIG

A0A5D3D2X2 Ribosomal protein L15

3.4e-99

64.04

Show/hide

Query:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN
        MKN D  PPRRK+KF P    R+ PPP P  KTEDEDG+    QTRYLLRRA ENLGKR N+VEKKSSVQVAFGPGA S+SSSIR+YG+PK  +  +KN+
Subjt:  MKNPDPPPPRRKLKFTPNFKPRKDPPPAP--KTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGA-SSSSSIRSYGIPKGGSSGKKNN

Query:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE
        IE +  +DE+ +  +  DV EDGK FD K +DGIA+    S++A+ TKTK+DYKEPWDY +SYYPTTLP+R PYSGD E L+EAEFG DAMN++YDE++ 
Subjt:  IELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAE

Query:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        +PALDLGL +EN ENTKYFFQLP+RLPLPKQSS+ATGKEKVG+SRSSNST +S+L DL KL  GC+GKLLIYKSGA+KL +GDIL+DVS  +  SFL+  
Subjt:  VPALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  IG
Subjt:  LSSLLFLLSCCEIKHIG

A0A6J1CGV5 DNA-directed RNA polymerase III subunit RPC4-like isoform X1

8.6e-103

66.88

Show/hide

Query:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI
        MKNPDP   PRRK+KF P   PRK PPPAPK EDEDG++N+ QTRYLLRRATENLGKRG +VEKK SVQVAFGPG AS+SSSIR+YG+PK G+S +KNNI
Subjt:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI

Query:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV
        E + SDDE+SI  LP DVEEDG +FD K EDG  + A+ +NA + TK KKDY+EPWDYH SYYP TLP+R PYSG PELL++AEFG DA +++YDE+A +
Subjt:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV

Query:  PALDLGLL-EENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK
        PALDL LL EE  E T YFFQLP+ LPLPKQSS+AT KEKVGSSRSSNS  TSELGDL KLPGG +GKLLIYKSGAVKL +G+ L+DVS  +  SFL+  
Subjt:  PALDLGLL-EENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSK

Query:  LSSLLFLLSCCEIKHIG
        ++       CC++  +G
Subjt:  LSSLLFLLSCCEIKHIG

A0A6J1CHV0 DNA-directed RNA polymerase III subunit RPC4-like isoform X2

3.5e-104

67.09

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Query:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI
        MKNPDP   PRRK+KF P   PRK PPPAPK EDEDG++N+ QTRYLLRRATENLGKRG +VEKK SVQVAFGPG AS+SSSIR+YG+PK G+S +KNNI
Subjt:  MKNPDPPP-PRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPG-ASSSSSIRSYGIPKGGSSGKKNNI

Query:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV
        E + SDDE+SI  LP DVEEDG +FD K EDG  + A+ +NA + TK KKDY+EPWDYH SYYP TLP+R PYSG PELL++AEFG DA +++YDE+A +
Subjt:  ELQDSDDEQSIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEV

Query:  PALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKL
        PALDL LLEE  E T YFFQLP+ LPLPKQSS+AT KEKVGSSRSSNS  TSELGDL KLPGG +GKLLIYKSGAVKL +G+ L+DVS  +  SFL+  +
Subjt:  PALDLGLLEENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS--NVLSFLRSKL

Query:  SSLLFLLSCCEIKHIG
        +       CC++  +G
Subjt:  SSLLFLLSCCEIKHIG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G25180.1 RNA polymerase III RPC4

6.0e-32

37.06

Show/hide

Query:  PDPPPPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGASSSSSIRSYGIPKGGSSGKKNNIELQDS
        P+PP P R+L             P   TE E+ + N   +R   RR    +G+R     K SS +VAF P + S  +IRS+G+PK      K N ++  S
Subjt:  PDPPPPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGASSSSSIRSYGIPKGGSSGKKNNIELQDS

Query:  DDEQSI--FSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVPAL
             +   S     +EDG+                      T+T  DY EPWDY +SYYPT LP+R P SGD ELL++ EFG  A N+ YDE+    A 
Subjt:  DDEQSI--FSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVPAL

Query:  DLGLLE-ENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS
        +LGL   ++++   + F++P  LP+ KQ++ AT K  V    S  S           LP G +GK+L+YKSGAVKL +GD LFDVS
Subjt:  DLGLLE-ENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS

AT5G09380.1 RNA polymerase III RPC4

6.4e-26

32.62

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Query:  PPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGASSSSSIRSYGIPKGGSSGKKNNIELQDSDDEQ
        PP RK+KF P   P++ P P  K E  + + NS Q   LLRR  E   ++    +K  + QVA+  G  +S+    Y     G+ G  +  E+       
Subjt:  PPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGASSSSSIRSYGIPKGGSSGKKNNIELQDSDDEQ

Query:  SIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVPALDLGLLE
                                                 +YKEPWDY+ SYYP TLPMR PY+GDPE+L+  EF        + E +   A +LGL+E
Subjt:  SIFSLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVPALDLGLLE

Query:  ENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS
        ++ E   +F +LPS +PL     ++T  E + +  +       +  DL  LP G +GKLL+YKSGAVK+ +G++L+DVS
Subjt:  ENAENTKYFFQLPSRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAACCCCGATCCTCCTCCTCCACGCAGAAAGCTCAAATTCACCCCAAATTTCAAACCGCGCAAAGATCCACCCCCCGCTCCGAAAACCGAAGACGAAGATGGCGA
TCGCAATTCCGTTCAAACTCGGTACCTCTTACGCCGTGCCACTGAGAATCTTGGAAAACGTGGGAACAGGGTCGAGAAAAAATCTTCAGTGCAAGTCGCTTTTGGTCCTG
GTGCATCATCATCCTCTTCTATTAGATCATACGGAATTCCCAAAGGAGGAAGTAGTGGTAAAAAGAATAACATTGAGCTTCAAGATTCTGATGACGAGCAATCTATTTTT
TCTCTGCCTAAGGATGTTGAAGAAGATGGCAAAGTTTTTGATGGAAAAATCGAAGATGGAATAGCAAAATTCGCCATTGATTCCAATGCTGCTATAGCAACCAAGACCAA
GAAGGATTACAAAGAACCTTGGGATTACCATAGTTCTTACTATCCTACTACACTTCCTATGCGGGCGCCTTACTCTGGAGATCCCGAACTGCTTAATGAAGCTGAGTTCG
GGCCGGATGCGATGAATAAGAAGTACGATGAGAGTGCTGAAGTACCTGCCTTGGATCTTGGATTGCTGGAGGAAAATGCAGAGAATACCAAGTACTTTTTTCAGCTTCCT
TCCCGTCTTCCGTTACCTAAACAATCATCTTCTGCAACGGGAAAGGAGAAAGTTGGAAGTTCGAGGTCATCGAATAGCACGGACACGTCAGAGCTCGGCGATTTGAACAA
ACTGCCTGGTGGGTGTGTGGGGAAACTATTGATATACAAGAGTGGAGCCGTTAAACTGAGTATGGGAGACATTCTTTTTGACGTGAGTAATGTCCTTAGCTTTTTACGAT
CGAAATTGTCGAGTTTGCTCTTTTTACTGTCTTGTTGTGAGATCAAACATATTGGGGCTGCTGCAGGTGTCTTCTGGTTCGAACTGCAGCTTTCATCAACATGTGGTAGC
AATCAACACCAAGGAGGGACAGTGTTGCGATCTCGGAGATATCGGGAAACGAGTCGTCGTGACACCTGA

mRNA sequence

Show/hide mRNA sequence

GGCAACTCTTCATTTCTCTATCCAACTGGTCTAGGGTTCGAAACTCCCCTCTTATCTTTTTTTTTTCGCCTTTTCGTTCGCCATCATCATCATCATCTTCAACCTCGAGC
TCATGAAGAACCCCGATCCTCCTCCTCCACGCAGAAAGCTCAAATTCACCCCAAATTTCAAACCGCGCAAAGATCCACCCCCCGCTCCGAAAACCGAAGACGAAGATGGC
GATCGCAATTCCGTTCAAACTCGGTACCTCTTACGCCGTGCCACTGAGAATCTTGGAAAACGTGGGAACAGGGTCGAGAAAAAATCTTCAGTGCAAGTCGCTTTTGGTCC
TGGTGCATCATCATCCTCTTCTATTAGATCATACGGAATTCCCAAAGGAGGAAGTAGTGGTAAAAAGAATAACATTGAGCTTCAAGATTCTGATGACGAGCAATCTATTT
TTTCTCTGCCTAAGGATGTTGAAGAAGATGGCAAAGTTTTTGATGGAAAAATCGAAGATGGAATAGCAAAATTCGCCATTGATTCCAATGCTGCTATAGCAACCAAGACC
AAGAAGGATTACAAAGAACCTTGGGATTACCATAGTTCTTACTATCCTACTACACTTCCTATGCGGGCGCCTTACTCTGGAGATCCCGAACTGCTTAATGAAGCTGAGTT
CGGGCCGGATGCGATGAATAAGAAGTACGATGAGAGTGCTGAAGTACCTGCCTTGGATCTTGGATTGCTGGAGGAAAATGCAGAGAATACCAAGTACTTTTTTCAGCTTC
CTTCCCGTCTTCCGTTACCTAAACAATCATCTTCTGCAACGGGAAAGGAGAAAGTTGGAAGTTCGAGGTCATCGAATAGCACGGACACGTCAGAGCTCGGCGATTTGAAC
AAACTGCCTGGTGGGTGTGTGGGGAAACTATTGATATACAAGAGTGGAGCCGTTAAACTGAGTATGGGAGACATTCTTTTTGACGTGAGTAATGTCCTTAGCTTTTTACG
ATCGAAATTGTCGAGTTTGCTCTTTTTACTGTCTTGTTGTGAGATCAAACATATTGGGGCTGCTGCAGGTGTCTTCTGGTTCGAACTGCAGCTTTCATCAACATGTGGTA
GCAATCAACACCAAGGAGGGACAGTGTTGCGATCTCGGAGATATCGGGAAACGAGTCGTCGTGACACCTGATATTAATTCCCTTTTGAAATTTACTGACTGACTGACTGA
CTCGGGATGAATGTAAAGAGCCTGTGGATAGAACAACTAACAAAAGAAACAGAAAGAAAGGGCAAATCCTTGCAATGTTAAAATGGAATGGAATGGATGGCTGGTTTGTT
ATGGAAGTTGCATTTTGCTGCTCTTAGGATGTAAGATTCTTGACTAAACTGCCTCCTTTTGTTAATTCGAATTCAACAAGAACATATTAATTCTCTGTTTTCTAGCTGTA
GAATTGGTTATTATCAAACAATATTGC

Protein sequence

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MKNPDPPPPRRKLKFTPNFKPRKDPPPAPKTEDEDGDRNSVQTRYLLRRATENLGKRGNRVEKKSSVQVAFGPGASSSSSIRSYGIPKGGSSGKKNNIELQDSDDEQSIF
SLPKDVEEDGKVFDGKIEDGIAKFAIDSNAAIATKTKKDYKEPWDYHSSYYPTTLPMRAPYSGDPELLNEAEFGPDAMNKKYDESAEVPALDLGLLEENAENTKYFFQLP
SRLPLPKQSSSATGKEKVGSSRSSNSTDTSELGDLNKLPGGCVGKLLIYKSGAVKLSMGDILFDVSNVLSFLRSKLSSLLFLLSCCEIKHIGAAAGVFWFELQLSSTCGS
NQHQGGTVLRSRRYRETSRRDT

Sed0019222 (gene) of Chayote v1 genome