CuGenDBv2

Gene ID	Sed0019241
Organism	Sechium edule (Chayote v1)
Description	respirasome Complex Assembly Factor 1-like
Genome location	LG01:8255178..8257822
RNA-Seq Expression	Sed0019241
Synteny	Sed0019241
Gene Ontology terms	GO:0006996 - organelle organization (biological process) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR010742 - Rab5-interacting protein IPR029008 - Rab5-interacting protein family

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004145291.1 uncharacterized protein RAB5IF homolog [Cucumis sativus]

8.8e-60

88.98

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKS+KVN + L QNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWGS+PLVGG+WFILFL IST M+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_008457469.1 PREDICTED: uncharacterized protein C20orf24 homolog [Cucumis melo]

1.0e-60

87.4

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGK++KVN +  HQNGHLPPFK A+LFDPE SWD+DQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFL IST M+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFAS+TLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_022948613.1 uncharacterized protein C20orf24 homolog [Cucurbita moschata]

4.2e-62

92.91

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_022998338.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]

9.4e-62

92.13

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFI+FL IST MVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

XP_038895585.1 respirasome Complex Assembly Factor 1-like isoform X2 [Benincasa hispida]

2.1e-61

90.55

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKS KVN +  HQNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY22 Uncharacterized protein

4.2e-60

88.98

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKS+KVN + L QNGHLPPFK AKLFDPE SWD+DQLGDVLHWMRQSVALVCGLLWGS+PLVGG+WFILFL IST M+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A1S3C692 uncharacterized protein C20orf24 homolog

5.0e-61

87.4

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGK++KVN +  HQNGHLPPFK A+LFDPE SWD+DQLGDVLHWMRQSVALVCGLLWGS+PLVGGIWFILFL IST M+YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFAS+TLFLLMWTL+YSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A2P5DQJ9 Rab5-interacting protein

1.8e-55

79.53

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MK+ KS+K+N +  HQNGHL PFKFAKL DPEASWD+DQLGDVLHW+RQ+VAL+CGLLWG++PLVGGIWF+ FLAIS+ ++YGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
         LLQEGLFAS+TLFLL W LVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A6J1G9S8 uncharacterized protein C20orf24 homolog

2.0e-62

92.91

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFL IST MVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

A0A6J1KGG2 uncharacterized protein C20orf24 homolog

4.5e-62

92.13

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG
        MKDGKSIKVN +  HQNGHLPPFK A LFDPEASWD+DQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFI+FL IST MVYGYYAMILKVDEEEFGGHG
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHG

Query:  VLLQEGLFASITLFLLMWTLVYSLGHF
        VLLQEGLFASITLFLLMWTLVYSLGHF
Subjt:  VLLQEGLFASITLFLLMWTLVYSLGHF

SwissProt top hits

e value

%identity

Alignment

Q9BUV8 Respirasome Complex Assembly Factor 1

2.3e-15

33.86

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGH
        M  G+  +  P+    NG L    ++K+   +A+W D+D+  DV++W RQ +A+V G++WG +PL G +    F  I+  ++Y Y++  L++DEEE+GG 
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGH

Query:  GVLLQEGLFASITLFLLMWTLVYSLGH
          L +EG   S  LF++     ++ GH
Subjt:  GVLLQEGLFASITLFLLMWTLVYSLGH

Q9CQT9 Respirasome Complex Assembly Factor 1

1.1e-17

35.16

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Query:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGH
        M  G+  +  P+    NG L    ++K+   +A+W D+D+  DV++W RQ +ALV G++WG +PL G +    F  I+  ++Y Y++  L++DEEE+GG 
Subjt:  MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASW-DRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGH

Query:  GVLLQEGLFASITLFLLMWTLVYSLGHF
          L +EG   S  LF+++W + Y+  H+
Subjt:  GVLLQEGLFASITLFLLMWTLVYSLGHF

Arabidopsis top hits

e value

%identity

Alignment

AT2G29020.1 Rab5-interacting family protein

7.4e-49

66.92

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Query:  MKDGKSIK------VNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEE
        MK+GKS K       + +  HQN HL  F FAKLFD EASWD+DQLGDVLHW+RQ V L+CGLLWG++PLVGGIW +LFLAIS+ +VYGYYA++LK+DEE
Subjt:  MKDGKSIK------VNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEE

Query:  EFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF
        +FGGH  LLQ+GLFAS++LFLL W LVYSL  F
Subjt:  EFGGHGVLLQEGLFASITLFLLMWTLVYSLGHF

AT5G59410.1 Rab5-interacting family protein

1.2e-51

73.85

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Query:  MKDGKSIKVN---PEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFG
        MK+ KS K+N    +  HQN HL P K AKLFDP+ASWD+DQLGDVLHW+RQ V L+ GLLWGS+PLVGGIW ILFLAIS+ +VYGYYAMILKVDEE+FG
Subjt:  MKDGKSIKVN---PEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFG

Query:  GHGVLLQEGLFASITLFLLMWTLVYSLGHF
        GH  LLQEGLFAS+TLFLL W LVYSL HF
Subjt:  GHGVLLQEGLFASITLFLLMWTLVYSLGHF

Sequences

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CDS sequence

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ATGAAGGACGGGAAGTCGATCAAGGTGAATCCCGAGTTTCTGCACCAGAACGGTCACTTGCCGCCCTTCAAATTCGCCAAATTGTTCGATCCAGAGGCTTCATGGGATAG
GGATCAACTGGGAGATGTCTTGCATTGGATGCGACAATCAGTTGCGCTTGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTTGTTGGAGGAATTTGGTTCATCTTATTCC
TGGCGATATCGACCGCGATGGTATACGGATACTACGCAATGATTTTGAAAGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCC
ATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACATTTCTGA

mRNA sequence

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ATTAAATAATTAATTTTTAATCATTCTTAAAACAACGTTAATTCCATTAAATATTTTTTGTTTCTGAAATTTAAATCTATTTTAAAACCAATTTCAAAATGAGAATCTCA
CGCAGCACAAATTTTGTAGAATAAACAAAGGCTGCCCAGCAAAAGATGTTCACGTTTTAGAGAGAGAGATAGAGAGAAGAATTTTTTTGAATTTCCGAGTTGAGATTGAA
ATGGAGTTCATAAATTTTTCTTGACAAAAACAAATCGAAAGGGATGTACCCAAAGCCGTCCCCACTCGGATGCTGTTCTTGCTTTTTTCAAAACCCTAAACCCATCTTCC
ATTCTTCCCTGTAGATTTCTGTTCTAATTTCCCCCCAAATTTTCAGTTTCCGATCAGCCGGCATGAAGGACGGGAAGTCGATCAAGGTGAATCCCGAGTTTCTGCACCAG
AACGGTCACTTGCCGCCCTTCAAATTCGCCAAATTGTTCGATCCAGAGGCTTCATGGGATAGGGATCAACTGGGAGATGTCTTGCATTGGATGCGACAATCAGTTGCGCT
TGTATGTGGGCTGCTTTGGGGTTCGGTGCCTCTTGTTGGAGGAATTTGGTTCATCTTATTCCTGGCGATATCGACCGCGATGGTATACGGATACTACGCAATGATTTTGA
AAGTAGACGAAGAAGAATTCGGCGGTCATGGAGTTCTCCTCCAGGAAGGGCTTTTTGCTTCCATAACTCTGTTTCTGCTTATGTGGACTCTCGTTTACAGCTTGGGACAT
TTCTGATACCGAGTTAAGCAATGGAGGGGGAGGTTGGCCGCCATTATTGCTTGCTTTTTTTTTAATTAGTGTTGTGTAGTAGCTTGTCGTTGAGGAGTAACAGGAGTGGA
ACACTCTTAGAAAGTGTCCACAAGTTAGAACTTAGAACTGGGTTAATTTCATTAGAATTACAACTAACCAAACTCTAGTTGTTAATGTTATTATTGATTCTGTTAAAATC
AATTCAATCTTCTTAAAAGAATAAAATCTTCAAACAAATGCAGTTTGG

Protein sequence

Show/hide protein sequence

MKDGKSIKVNPEFLHQNGHLPPFKFAKLFDPEASWDRDQLGDVLHWMRQSVALVCGLLWGSVPLVGGIWFILFLAISTAMVYGYYAMILKVDEEEFGGHGVLLQEGLFAS
ITLFLLMWTLVYSLGHF

Sed0019241 (gene) of Chayote v1 genome