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Sed0019276 (gene) of Chayote v1 genome

Gene IDSed0019276
OrganismSechium edule (Chayote v1)
DescriptionPMD domain-containing protein
Genome locationLG04:6058367..6061382
RNA-Seq ExpressionSed0019276
SyntenySed0019276
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033822.1 uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]1.8e-1648.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++ GI+LPV    +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]2.3e-1648.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D  QS++ GI+LPV +  +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]2.5e-0268.97Show/hide
Query:  VKGPMMVEFSGESGAKYFTDFEARVHMHK
        ++GP MVEFSGE GAKY+T+ EAR+H+HK
Subjt:  VKGPMMVEFSGESGAKYFTDFEARVHMHK

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]8.3e-1445.05Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++  I+LPV    +E+  +SQ   E    L KWS E  +  N+ L +WFL+S IHN +PN N  STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

TYK21863.1 uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]1.8e-1648.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++ GI+LPV    +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]1.3e-1949.49Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLVPKPVKGP
        MV+FT++ D  + CL+IL+D +QS+  GIILPV    YE+  +SQ P +   FL KWS E F+ PN+SLK+WFL+S IHN  PN +P STL  + +  P
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLVPKPVKGP

TrEMBL top hitse value%identityAlignment
A0A5A7SRI5 Uncharacterized protein8.7e-1748.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++ GI+LPV    +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

A0A5A7SST7 PMD domain-containing protein4.0e-1445.05Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++  I+LPV    +E+  +SQ   E    L KWS E  +  N+ L +WFL+S IHN +PN N  STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

A0A5A7U4C3 Uncharacterized protein1.1e-1648.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D  QS++ GI+LPV +  +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

A0A5A7U4C3 Uncharacterized protein1.2e-0268.97Show/hide
Query:  VKGPMMVEFSGESGAKYFTDFEARVHMHK
        ++GP MVEFSGE GAKY+T+ EAR+H+HK
Subjt:  VKGPMMVEFSGESGAKYFTDFEARVHMHK

A0A5A7U4C3 Uncharacterized protein4.0e-1445.05Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++  I+LPV    +E+  +SQ   E    L KWS E  +  N+ L +WFL+S IHN +PN N  STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

A0A5D3DEA3 Uncharacterized protein8.7e-1748.35Show/hide
Query:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL
        MVYFT++ D  + CL+IL+D+ QS++ GI+LPV    +E+  +SQ   E    L KWS E  + PN+ L +WFL+S IHN +PN NP STL
Subjt:  MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTATTTTACAGATCATCCCGATCCTAAAGAAAACTGCTTGGTCATCTTGAGAGATAAAGAACAATCCATTAATCATGGAATCATTCTTCCTGTAGGCAGACCGAT
ATATGAAGACTTTAGAGAGTCACAGCCACCTGTAGAAAAATCTAATTTTCTCTCCAAGTGGTCAAATGAAGGGTTCTTGGGTCCCAACACATCTTTGAAAGCGTGGTTCT
TAGACTCCCCAATTCATAATCATATGCCAAACAACAATCCGTTGTCAACACTAGTTCCTAAGCCAGTTAAAGGTCCAATGATGGTCGAATTTTCTGGCGAAAGTGGGGCC
AAATATTTTACTGATTTTGAAGCTCGTGTACACATGCACAAGGAGGAAATCTCGGAGTCTATTGTTGAGAAGGAGACTTATTTGGCTCATCTCAAACGTGATGAATGTGC
AGCACGTGAAGCTATAACTGATGTTGAAAGTTCTGATGCCATTTCTGATGAAGATGCTTGTAACTTGGAGATACTTCGTGGGATGTTGAGTGATGCTCTTCAAGAATTGC
AAGATTTCAAATGGGTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTATTTTACAGATCATCCCGATCCTAAAGAAAACTGCTTGGTCATCTTGAGAGATAAAGAACAATCCATTAATCATGGAATCATTCTTCCTGTAGGCAGACCGAT
ATATGAAGACTTTAGAGAGTCACAGCCACCTGTAGAAAAATCTAATTTTCTCTCCAAGTGGTCAAATGAAGGGTTCTTGGGTCCCAACACATCTTTGAAAGCGTGGTTCT
TAGACTCCCCAATTCATAATCATATGCCAAACAACAATCCGTTGTCAACACTAGTTCCTAAGCCAGTTAAAGGTCCAATGATGGTCGAATTTTCTGGCGAAAGTGGGGCC
AAATATTTTACTGATTTTGAAGCTCGTGTACACATGCACAAGGAGGAAATCTCGGAGTCTATTGTTGAGAAGGAGACTTATTTGGCTCATCTCAAACGTGATGAATGTGC
AGCACGTGAAGCTATAACTGATGTTGAAAGTTCTGATGCCATTTCTGATGAAGATGCTTGTAACTTGGAGATACTTCGTGGGATGTTGAGTGATGCTCTTCAAGAATTGC
AAGATTTCAAATGGGTTCCATGA
Protein sequenceShow/hide protein sequence
MVYFTDHPDPKENCLVILRDKEQSINHGIILPVGRPIYEDFRESQPPVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLVPKPVKGPMMVEFSGESGA
KYFTDFEARVHMHKEEISESIVEKETYLAHLKRDECAAREAITDVESSDAISDEDACNLEILRGMLSDALQELQDFKWVP