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Sed0019331 (gene) of Chayote v1 genome

Gene IDSed0019331
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG08:6116000..6116905
RNA-Seq ExpressionSed0019331
SyntenySed0019331
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046551.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.9e-0761.67Show/hide
Query:  MERLPLLLGLHANAP-----PPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL
        ME+L LLL  HANAP     PPPAP+  LKRIHIG ALSP IFTYS A++  A+I W  L
Subjt:  MERLPLLLGLHANAP-----PPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL

KAE8652979.1 hypothetical protein Csa_021104, partial [Cucumis sativus]4.1e-0762.3Show/hide
Query:  MERLPLLLGLHANA------PPPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL
        MERL LLL  HANA      PPPPAP+  LKRIHIG ALSP  FTYS A++  AVI W +L
Subjt:  MERLPLLLGLHANA------PPPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL

KAG6587964.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]9.7e-0957.81Show/hide
Query:  MERLPLLL-----GLHANAPP---PPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVLD
        MERL L+L      +HANAPP   PP+ +  LKR HIGRA SPVIFTYSEA++D  VICW +++
Subjt:  MERLPLLL-----GLHANAPP---PPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVLD

KAG7021854.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]2.8e-0861.67Show/hide
Query:  MERLPLLL-----GLHANAPP---PPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICW
        MERL L+L      +HANAPP   PP+ +  LKR HIGRA SPVIFTYSEA++D  VICW
Subjt:  MERLPLLL-----GLHANAPP---PPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICW

TrEMBL top hitse value%identityAlignment
A0A5A7TZ04 Pentatricopeptide repeat-containing protein3.4e-0761.67Show/hide
Query:  MERLPLLLGLHANAP-----PPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL
        ME+L LLL  HANAP     PPPAP+  LKRIHIG ALSP IFTYS A++  A+I W  L
Subjt:  MERLPLLLGLHANAP-----PPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGGCTGCCCCTGCTGCTCGGCCTCCATGCAAATGCACCGCCGCCGCCCGCTCCTTCTACCCTTCTGAAGAGAATCCATATTGGACGAGCTTTATCTCCAGTCAT
CTTCACTTATTCAGAGGCTTTGAGAGACTGTGCTGTAATATGTTGGGGTGTTTTGGATATTGATTTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGGCTGCCCCTGCTGCTCGGCCTCCATGCAAATGCACCGCCGCCGCCCGCTCCTTCTACCCTTCTGAAGAGAATCCATATTGGACGAGCTTTATCTCCAGTCAT
CTTCACTTATTCAGAGGCTTTGAGAGACTGTGCTGTAATATGTTGGGGTGTTTTGGATATTGATTTTCTTTGA
Protein sequenceShow/hide protein sequence
MERLPLLLGLHANAPPPPAPSTLLKRIHIGRALSPVIFTYSEALRDCAVICWGVLDIDFL