CuGenDBv2

Gene ID	Sed0019368
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 13-like
Genome location	LG05:2293695..2294464
RNA-Seq Expression	Sed0019368
Synteny	Sed0019368
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR039281 - Arabinogalactan protein 3/12/13/14/21

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570311.1 hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia]

7.7e-09

72.58

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K +LV+LL+   FA   AQ +APSEAPAPAPASDA PLF PTFFASLSALVFAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

KAG6605834.1 Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia]

6.9e-10

74.19

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEAMK+K +LV+L+LVA FAG  AQA+APSEAPAPAPASDA PL Y +FFASLS LVFA+ L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

XP_022944304.1 arabinogalactan peptide 13-like [Cucurbita moschata]

6.9e-10

74.19

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K +LV+LL+   FA   AQ +APSEAPAPAPASDA PLFYPTFFASLSALVFAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

XP_023513159.1 arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo]

7.2e-07

70.97

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K  LV+LL+   FA   AQ +APSE  APAPASDA PLFYPTFFASLSALVFAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

XP_038902540.1 arabinogalactan protein 13-like [Benincasa hispida]

2.0e-09

70.97

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K +LV+LL+   FAG  AQ++ PSEAPAPAPASDA  LFYPTFFASLSAL+FAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

TrEMBL top hits

e value

%identity

Alignment

A0A438JV44 Arabinogalactan peptide 14

1.6e-04

58.06

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEAMKMK +L V+++  + A +  Q +A + APAPAPASDA  +F PTFFASL+AL F FLL
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

A0A6J1FWG8 arabinogalactan peptide 13-like

3.4e-10

74.19

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K +LV+LL+   FA   AQ +APSEAPAPAPASDA PLFYPTFFASLSALVFAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

A0A6J1J5K6 arabinogalactan peptide 13-like

3.4e-10

74.19

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEA+K+K +LV+LL+   FA   AQ +APSEAPAPAPASDA PLFYPTFFASLSALVFAF L
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

F6GUN4 Uncharacterized protein

1.6e-04

58.06

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL
        MEAMKMK +L V+++  + A +  Q +A + APAPAPASDA  +F PTFFASL+AL F FLL
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

SwissProt top hits

e value

%identity

Alignment

Q9LVC0 Arabinogalactan protein 14

9.1e-05

53.33

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAF
        MEAMKMK Y+VVL+ V  F+    Q  A  +APAP+P SDA   F PTFFAS++ + F F
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAF

Q9STQ3 Arabinogalactan protein 13

7.7e-04

54.1

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL
        MEAMKM+  L V +LVA  A +  Q +A  EAPAP+P SDA  L  P FFAS++ L F FL
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL

Arabidopsis top hits

e value

%identity

Alignment

AT3G13520.1 arabinogalactan protein 12

7.2e-05

51.61

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Query:  MEAMKMKRYLVVLLLVAVFA-GAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL
        ME+MKMK  L+V+L+VA+ A  A    +A +EAPAP+P SDA  +F P  FAS++AL   FL
Subjt:  MEAMKMKRYLVVLLLVAVFA-GAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL

AT4G26320.1 arabinogalactan protein 13

5.5e-05

54.1

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL
        MEAMKM+  L V +LVA  A +  Q +A  EAPAP+P SDA  L  P FFAS++ L F FL
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFL

AT5G56540.1 arabinogalactan protein 14

6.5e-06

53.33

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Query:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAF
        MEAMKMK Y+VVL+ V  F+    Q  A  +APAP+P SDA   F PTFFAS++ + F F
Subjt:  MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAF

Sequences

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CDS sequence

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ATGGAGGCAATGAAGATGAAGCGTTACCTGGTGGTGTTGCTGCTCGTAGCGGTCTTTGCCGGCGCCTTCGCCCAAGCTTCCGCTCCTTCCGAGGCTCCCGCTCCCGCTCC
GGCCTCCGATGCTCCTCCTCTCTTCTACCCCACCTTCTTTGCTTCTCTATCTGCTCTTGTTTTTGCCTTCTTGCTTTAA

mRNA sequence

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TCCAATTCCCCAATTATAGTTGAACTAAAGAAAATCCCACCAATTAGTGTAGCCAAGAAAATGATTTAGAGGTATTGAGAAAACAAAGAATAAGGGATCGAAAAAGAAAA
AAGAACAAAAAAAGTGAGAAAAACAGGGAGACCCACAGACAGGTAGATAAAGGTGTAACAGTTAGCGAATGATAAGGTAAAGCAAGCAAGCAAGCAAAACCACCCTGTAG
GTGTCTGAGTTGTGTGGCCATGGCTTTCACAAATGCATCATAAATAGCCTCTTCTTCTTTGAGTTCAATTCAACAGCAGCCAAAAGCCAAGAGGGAAAAGTCTGCAATTC
TCTCACAATTACATTTCATTAAGCAATGGAGGCAATGAAGATGAAGCGTTACCTGGTGGTGTTGCTGCTCGTAGCGGTCTTTGCCGGCGCCTTCGCCCAAGCTTCCGCTC
CTTCCGAGGCTCCCGCTCCCGCTCCGGCCTCCGATGCTCCTCCTCTCTTCTACCCCACCTTCTTTGCTTCTCTATCTGCTCTTGTTTTTGCCTTCTTGCTTTAAGCAGCT
TTGATTCTCTCCCTCTTGGTGCTGCCTGCTTCTGATTATTATTATTGTATATCTTCTTCTTTTGCTATTTCATTGCTTCTTTTAATGAAGCTTTATTCTTTCTCATAGAA
TGTTGATGTCATTGGTTGTCTTTGCCTAATAATATGACATTAATTAATAACCTGTTTGATAACCATTTGATTTTTTGTTTTTGGTTTTTGAAATTTAAGCCTGTAACAAC

Protein sequence

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MEAMKMKRYLVVLLLVAVFAGAFAQASAPSEAPAPAPASDAPPLFYPTFFASLSALVFAFLL

Sed0019368 (gene) of Chayote v1 genome