CuGenDBv2

Gene ID	Sed0019428
Organism	Sechium edule (Chayote v1)
Description	54S ribosomal protein L37, mitochondrial-like
Genome location	LG06:4043828..4048014
RNA-Seq Expression	Sed0019428
Synteny	Sed0019428
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022154133.1 54S ribosomal protein L37, mitochondrial-like [Momordica charantia]

9.8e-54

85.61

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        MAMSQ RLF RS++N KD IK+T+VRTFAAGGKKKGSKGGAAADGPKASILSKEVKS+TVVGAN LKEGADPK+MADSEYPDWLWRLIDKHP LSELRRK
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        +VE LPY+DL+RFVKLD RA IKENNS+KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

XP_022928329.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita moschata]

1.3e-53

86.47

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR
        MAMSQIRL RRSL+NTKDLIKLT VRTFAAGGKKKGSK GGAA D PKASILSKEVKSTTVVGAN LKEGADPK+MADSEYPDWLWRLIDK P LSEL+R
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR

Query:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        K  +TLPY+DL+RFVKLDTRA+IKENNS KAKN
Subjt:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

XP_022989738.1 54S ribosomal protein L37, mitochondrial-like [Cucurbita maxima]

2.7e-56

88.64

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        MAMSQIRLFRRSL+NTKDLIKLT VRTFAAGGKKKGSKGGAA D PKASILSKEVKSTTVVGAN LKEGADPK+MADSEYPDWLWRLIDK P LSELRRK
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
          +TLPY+DL+RFVKLDTRA+IKENNS KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

XP_038883606.1 39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]

1.5e-54

87.97

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR
        M MSQIRLFRRS+VN+KDLI+LT+VRTFAAGGK KKGSKGGAAAD PKAS LSKEVKSTTVVGAN LKEGADPKIMADSEYP WLW L+DKHPPLSELRR
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR

Query:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        K+VETLPY DL+RFVKLDTRAKIKENNS KAKN
Subjt:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]

1.5e-54

87.97

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR
        M MSQIRLFRRS+VN+KDLI+LT+VRTFAAGGK KKGSKGGAAAD PKAS LSKEVKSTTVVGAN LKEGADPKIMADSEYP WLW L+DKHPPLSELRR
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR

Query:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        K+VETLPY DL+RFVKLDTRAKIKENNS KAKN
Subjt:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X2

8.3e-51

82.71

Show/hide

Query:  MAMSQIRLFRRS-LVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELR
        M +SQIR FRR+ +V++KDLI+LT+VR+FAAGGK KKGSKGGAAAD PKASILSKEVKSTTVVGAN LKEGADPKIMADSEYP WLW L+DKHPPLSELR
Subjt:  MAMSQIRLFRRS-LVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELR

Query:  RKSVETLPYDDLRRFVKLDTRAKIKENNSMKAK
        RK+ E+LPY DLRRFVKLDTRA+IKENNS+KAK
Subjt:  RKSVETLPYDDLRRFVKLDTRAKIKENNSMKAK

A0A5D3CXE8 39S ribosomal protein L54

8.3e-51

82.71

Show/hide

Query:  MAMSQIRLFRRS-LVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELR
        M +SQIR FRR+ +V++KDLI+LT+VR+FAAGGK KKGSKGGAAAD PKASILSKEVKSTTVVGAN LKEGADPKIMADSEYP WLW L+DKHPPLSELR
Subjt:  MAMSQIRLFRRS-LVNTKDLIKLTTVRTFAAGGK-KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELR

Query:  RKSVETLPYDDLRRFVKLDTRAKIKENNSMKAK
        RK+ E+LPY DLRRFVKLDTRA+IKENNS+KAK
Subjt:  RKSVETLPYDDLRRFVKLDTRAKIKENNSMKAK

A0A6J1DJG1 54S ribosomal protein L37, mitochondrial-like

4.7e-54

85.61

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        MAMSQ RLF RS++N KD IK+T+VRTFAAGGKKKGSKGGAAADGPKASILSKEVKS+TVVGAN LKEGADPK+MADSEYPDWLWRLIDKHP LSELRRK
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        +VE LPY+DL+RFVKLD RA IKENNS+KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

A0A6J1EKI4 54S ribosomal protein L37, mitochondrial-like

6.2e-54

86.47

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR
        MAMSQIRL RRSL+NTKDLIKLT VRTFAAGGKKKGSK GGAA D PKASILSKEVKSTTVVGAN LKEGADPK+MADSEYPDWLWRLIDK P LSEL+R
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSK-GGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRR

Query:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        K  +TLPY+DL+RFVKLDTRA+IKENNS KAKN
Subjt:  KSVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like

1.3e-56

88.64

Show/hide

Query:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        MAMSQIRLFRRSL+NTKDLIKLT VRTFAAGGKKKGSKGGAA D PKASILSKEVKSTTVVGAN LKEGADPK+MADSEYPDWLWRLIDK P LSELRRK
Subjt:  MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
          +TLPY+DL+RFVKLDTRA+IKENNS KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

SwissProt top hits

e value

%identity

Alignment

Q9CPW3 39S ribosomal protein L54, mitochondrial

2.5e-04

39.29

Show/hide

Query:  TVRTFAAGGKKKGSKGGAAADGPK-ASILSKEVKSTT-VVGANALKEGADPKIMADSEYPDWLWRLIDKHPP--LSELRRKSVE
        ++R +A     KG KGG AA+  K   + +   + TT  +G N  KEG D  + ADSEYP WL++ ++  PP  L EL  +S E
Subjt:  TVRTFAAGGKKKGSKGGAAADGPK-ASILSKEVKSTT-VVGANALKEGADPKIMADSEYPDWLWRLIDKHPP--LSELRRKSVE

Arabidopsis top hits

e value

%identity

Alignment

AT3G01740.1 Mitochondrial ribosomal protein L37

3.1e-42

67.42

Show/hide

Query:  MSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK--KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        M++I L R S  ++KD+++    RTFAA     KKG KGG A+D PK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YPDWLW L+DK P LSELRRK
Subjt:  MSQIRLFRRSLVNTKDLIKLTTVRTFAAGGK--KKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        +VETLPYDDL+RFVKLDTR KIKENNS+KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

AT5G14290.1 Mitochondrial ribosomal protein L37

1.2e-36

59.85

Show/hide

Query:  MSQIRLFRRSLVNTKDLIKLTTVRTF--AAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK
        M+ IR+F  S+  +KD+++    RTF  AAG  KK  +G    D PKAS LSKE+KS+ VV AN LK+G DPKI+ +S++PD+LW L+DK P LSELRRK
Subjt:  MSQIRLFRRSLVNTKDLIKLTTVRTF--AAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRK

Query:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN
        +VETL +DDL+RFVKLDTRA+IKEN+S+KAKN
Subjt:  SVETLPYDDLRRFVKLDTRAKIKENNSMKAKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATGAGTCAAATTAGATTGTTTAGAAGAAGCCTTGTGAATACCAAAGATCTAATAAAACTGACAACTGTGCGAACATTTGCTGCTGGAGGCAAAAAGAAGGGCTC
TAAAGGGGGTGCAGCTGCTGATGGTCCTAAAGCATCAATCCTAAGTAAAGAGGTCAAGTCGACAACTGTAGTTGGTGCCAATGCTCTCAAGGAAGGTGCAGATCCAAAAA
TCATGGCGGACTCCGAGTACCCTGACTGGCTGTGGCGTTTGATCGATAAACATCCACCTCTGAGTGAACTACGAAGGAAGAGTGTCGAAACCCTTCCCTATGATGATCTC
AGACGCTTTGTTAAATTGGATACTCGAGCAAAGATTAAGGAAAACAACTCGATGAAGGCGAAGAATTGA

mRNA sequence

Show/hide mRNA sequence

CAAAATGAAAATGGAAAAAAAAAAAAAAAAAAGGGGGAAAAAGGAGTTGTGAGCCGAAACCCTAACAGGCACATCATTTTCCTTTTCTGCCATTGCCGAACTTTTGACGC
TCCATTCTCAGTCTCAAACTACAGAATTCTAAAATGGCTATGAGTCAAATTAGATTGTTTAGAAGAAGCCTTGTGAATACCAAAGATCTAATAAAACTGACAACTGTGCG
AACATTTGCTGCTGGAGGCAAAAAGAAGGGCTCTAAAGGGGGTGCAGCTGCTGATGGTCCTAAAGCATCAATCCTAAGTAAAGAGGTCAAGTCGACAACTGTAGTTGGTG
CCAATGCTCTCAAGGAAGGTGCAGATCCAAAAATCATGGCGGACTCCGAGTACCCTGACTGGCTGTGGCGTTTGATCGATAAACATCCACCTCTGAGTGAACTACGAAGG
AAGAGTGTCGAAACCCTTCCCTATGATGATCTCAGACGCTTTGTTAAATTGGATACTCGAGCAAAGATTAAGGAAAACAACTCGATGAAGGCGAAGAATTGATAAAATAA
GAGAATTAGAATCAAGTCAAATCTCCATATTGAAGGAAGAACAAGCAAAAGCTTACAACAGGGGCATGACATTTCAGGTCTGTAAGCTATCATCTTATTGTCAAAAAGTG
CTGAACTTTTTATTTTACTTCACATTCTTTAGTTGAATAAAAACAAGGAAGATAATGGTTTTTTTTCATAATCAAAACCTTTGAATTATTAAAAAAAAAATGAATGTGTA
CGGAATATTTTCATTATCCACTATGATTTTATATTCCACTTTTATAATACAAATGAAATATTCAACTTGGTTAGGT

Protein sequence

Show/hide protein sequence

MAMSQIRLFRRSLVNTKDLIKLTTVRTFAAGGKKKGSKGGAAADGPKASILSKEVKSTTVVGANALKEGADPKIMADSEYPDWLWRLIDKHPPLSELRRKSVETLPYDDL
RRFVKLDTRAKIKENNSMKAKN

Sed0019428 (gene) of Chayote v1 genome