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Sed0019436 (gene) of Chayote v1 genome

Gene IDSed0019436
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationContig00347:106986..107969
RNA-Seq ExpressionSed0019436
SyntenySed0019436
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]1.8e-4778.17Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQE
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCT   S SKGDLS   ST                 L  GFEITAYIPGIGHN QE
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

RWR98291.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]6.3e-4877.3Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNL-------------------GFEITAYIPGIGHNLQEH
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCT   S SKGDLS   +L                   GFEITAYIPGIGHN QEH
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNL-------------------GFEITAYIPGIGHNLQEH

Query:  SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]2.9e-5383.22Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMT KELNEEPYEVKISCTVLSSGSKGDLS   ST                 L  GFEITAYIPGIGHNLQ
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]3.0e-5080.42Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ
        MNENVT+LV VTLRDGMEEGRRFSNEEKDPMT KELNEEPYEVKIS TVLSSGSKGDLS   ST                 L  GFEI AYIPGIGHNLQ
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHS VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.2e-4980.42Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ
        MNENVTELVLVTLRDGMEEGRRFSNEEKDPMT KELNEEPYEVKIS TVLSSGSKGDLS   ST                 L  GFEITAYIPGIGHNLQ
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        E+ VVLVRG RVKDLP VRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic8.9e-4878.17Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQE
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCT   S SKGDLS   ST                 L  GFEITAYIPGIGHN QE
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A3S3PCQ6 30S ribosomal protein S12, chloroplastic3.1e-4877.3Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNL-------------------GFEITAYIPGIGHNLQEH
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCT   S SKGDLS   +L                   GFEITAYIPGIGHN QEH
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNL-------------------GFEITAYIPGIGHNLQEH

Query:  SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  SVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A3S4Q358 30S ribosomal protein S12, chloroplastic3.2e-4566.67Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSS----------------------TLNLGFEITAYIPGIGHNL
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCTVL +     LS+                       L  GFEITAYIPGIGHN 
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSS----------------------TLNLGFEITAYIPGIGHNL

Query:  QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS-----ALISNPSRKGRETDTQFN
        QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS      L+S   R G     +FN
Subjt:  QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS-----ALISNPSRKGRETDTQFN

A0A443Q433 30S ribosomal protein S12, chloroplastic7.5e-4775.71Show/hide
Query:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSST------------------LNLGFEITAYIPGIGHNLQEHS
        +ENVTELVLVTLRDG+EEGRRFSNEEKDP+T KELNEEPYEVKISCTVL +     LS++                  L  GFEITAYIPGIGHN QEHS
Subjt:  NENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSST------------------LNLGFEITAYIPGIGHNLQEHS

Query:  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

A0A6J1F0L1 uncharacterized protein LOC1114383941.4e-5383.22Show/hide
Query:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMT KELNEEPYEVKISCTVLSSGSKGDLS   ST                 L  GFEITAYIPGIGHNLQ
Subjt:  MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.3e-2767.65Show/hide
Query:  SCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALIS
        +CT + SGSKGDLS   ST                 L  GFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   + 
Subjt:  SCTVLSSGSKGDLS---ST-----------------LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALIS

Query:  NP
         P
Subjt:  NP

A4QJV5 30S ribosomal protein S12-A, chloroplastic2.4e-2687.88Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP
        L  GFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP

Q0G9J5 30S ribosomal protein S12, chloroplastic1.4e-2695.16Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        L  GFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q1KXY0 30S ribosomal protein S12, chloroplastic1.4e-2695.16Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        L  GFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Q332V3 30S ribosomal protein S12, chloroplastic1.4e-2695.16Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        L  GFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein6.4e-1461.11Show/hide
Query:  EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

ATCG00065.1 ribosomal protein S12A1.7e-2787.88Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP
        L  GFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP

ATCG00905.1 ribosomal protein S12C1.7e-2787.88Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP
        L  GFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP

ATCG01230.1 ribosomal protein S12B1.7e-2787.88Show/hide
Query:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP
        L  GFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS   +  P
Subjt:  LNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALISNP

ATMG00980.1 Ribosomal protein S12/S23 family protein6.4e-1461.11Show/hide
Query:  EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  EITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTAGTACGCTTAACCTCGGATTTGAAATCACTGCTTATATACCTG
GTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTC
GGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAATACATATAGAATTCTGTGGAAAGC
CGTATCTGATGAAAGTCGTATGTATGGCTTGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCTGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTTGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTAGTACGCTTAACCTCGGATTTGAAATCACTGCTTATATACCTG
GTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCTGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTC
GGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAGGGAGGGAAACGGATACTCAATTTAATACATATAGAATTCTGTGGAAAGC
CGTATCTGATGAAAGTCGTATGTATGGCTTGGAGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAATGA
Protein sequenceShow/hide protein sequence
MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTLKELNEEPYEVKISCTVLSSGSKGDLSSTLNLGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAV
GVKDRQQGRSSALISNPSRKGRETDTQFNTYRILWKAVSDESRMYGLEEIFHIFRDPPYNMGSKSQNK