| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0065060.1 RNA polymerase sigma factor sigC [Cucumis melo var. makuwa] | 5.3e-250 | 84.17 | Show/hide |
Query: PPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTG
P S V KGREA+FNS RLSFFS+ICEEGESI RETLKT TCLSEAPQTS DDLL+LEE ++NS AKS++ LHYG+K+T PSKVEDNFSS TS+PTG
Subjt: PPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTG
Query: KASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKER
KASPFG+LMENLDVLEETFAESGML LE+DIVLQLTKLGALE FNTCLSRTLKTSSFH LSDLP EDG +HNVNQKTN N D+ V SGK AGRRSVK+R
Subjt: KASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKER
Query: AMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWL
AMDNA+KVAS+PLAT A KE S+IFSRK+ SNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESG+IA+MSCWA+AA V +K+LQKQLQFGW
Subjt: AMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWL
Query: CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGS
C+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN G
Subjt: CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGS
Query: RRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
RRY+DDDIA+ATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK++LMKKDI N+L+ LESRERQV+ LRYGL+DFQPKSLEE
Subjt: RRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
Query: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
IGKLLH+SKEW RKIEKKAMTKLKNEETV+NLSHYL+
Subjt: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 1.2e-262 | 84.31 | Show/hide |
Query: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
MMGT RPNLKWGFQ+ HS S PSKLSPY KGREA+FNS RLSFFS+ICEEGESI RETLKT TCLSEAPQTS DDLL+LEE ++NS AKS++ LH
Subjt: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
Query: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQK
YG+K+T PSKVEDNFSS TS+PTGKASPFG+LMENLDVLEETFAESGML LE+DIVLQLTKLGALE FNTCLSRTLKTSSFH LSDLP EDG +HNVNQK
Subjt: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQK
Query: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
TN N D+ V SGK AGRRSVK+RAMDNA+KVAS+PLAT A KE S+IFSRK+ SNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESG+IA+
Subjt: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
Query: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWA+AA V +K+LQKQLQFGW C+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
QIPWSLTKAINQIQKARK LN G RRY+DDDIA+ATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDI N+L+ L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
Query: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
ESRERQV+ LRYGL+DFQPKSLEEIGKLLH+SKEW RKIEKKAMTKLKNEETV+NLSHYL+
Subjt: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 2.4e-258 | 84.34 | Show/hide |
Query: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
MGTS RPNLKW FQM HSRN S PSK P+ KGREASFNS+RLSFFSAICEEGES RETLKT TCLSEAPQTSADDLLDL+E +INSRA+ ++H HY
Subjt: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
Query: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK--TSSFHALSDLPNEDGGNHNVNQ
G+KNTGPSK+EDNFSS TSLPTGKAS FGMLMENLDVLEE F ESGML LE+DIVLQLTKLGALE FNTCLSRTLK TSSF LSDLP EDGG HNVNQ
Subjt: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK--TSSFHALSDLPNEDGGNHNVNQ
Query: KTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIA
KT+ N DI V SGK GRRS+KERA D A+KVASQP ATGAAKE F S+ F RKR NS +RRL+VARNEAEMSTGVKVVANLERIRETLEKES K A
Subjt: KTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIA
Query: NMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
+MSCWADAAG+ +K+L KQLQFGW CQ+ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Subjt: NMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEA
IQIPWSLTKAINQIQKARKALNNGSRRY+DDDIAKATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDI NLLE
Subjt: IQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEA
Query: LESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
LE RERQV+ALRYGL DFQPKSLEEIGKLLH+SKEW RKIEKKAMTKLKNEET NL HYL+
Subjt: LESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 4.8e-251 | 82.17 | Show/hide |
Query: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
MGTS RPNLKW FQ+ HSR AS PSKLSPY KGREASFNS RLSFFS+ CEEGE+I RE LKT TCLSEAPQT AD LLDLEE +INS AKS++HLHY
Subjt: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
Query: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVNQK
G KN+GPSKVEDNF S TSLPTG+ASPF MLMENLDVLEETF ESGML LE+DIVLQLTKLGALE FN CLSRTLK +SSF LSDLP E GG+HNVNQK
Subjt: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVNQK
Query: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
T+ N +I V SGK AGRRSVK RAMDNA+KVAS+PLAT AAKE FR SRK+ SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESG+ A+
Subjt: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
Query: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADA+ + +K+LQKQLQFGW CQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGI
Subjt: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
QIPWSLTKAINQIQKARKALNN RRY+DDD+AKATGLPLAKVRVA+NCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDI NLLE L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
Query: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
ESRERQV+ LRYGL+D QPKSLEEIGKLL +SKEW RKIE+KA TKLKNEETVRNLSHYL+
Subjt: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 1.0e-256 | 82.65 | Show/hide |
Query: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
MMGTS RPNLKWGFQ+ HSR S PSKL PY KGREA+FNS RLSFFS+I EEGESI RETLKT TCLSEAPQTSADDLL+LEE ++N AKS++ LH
Subjt: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
Query: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDL----PNEDGGNHN
YG+KNT PSKVEDNFSS TS P+GKASPFGMLMENLDVLEETF ESGML LE+DIVLQLTKLGALE FNTCLSRTLKTSSFH LSDL P ED G+HN
Subjt: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDL----PNEDGGNHN
Query: VNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESG
VNQKT N DI V SGK A RRSVK+RAMD+A+KV SQPLAT AAKE S+I SRK+ SNS KRRLI+ARNEAEMSTGVKVVANLERIRETLEKESG
Subjt: VNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESG
Query: KIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARN
++ +MSCWA+AAGV +K+L+KQLQFGW CQDELLRSTNSL+LFLA+KYRCSGLPMEDLVQAG++GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARN
Subjt: KIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARN
Query: SRGIQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNL
+RGIQIPWSLTKAINQIQKARK LNNG RRY+DDDIAKATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVKQKLMKKDI N+
Subjt: SRGIQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNL
Query: LEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
LE LESRERQV+ LRYGL+DFQPKSLEEIGKLLH+SKEW RKIEKKAMTKL++EETVRN SHYL+
Subjt: LEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 5.9e-263 | 84.31 | Show/hide |
Query: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
MMGT RPNLKWGFQ+ HS S PSKLSPY KGREA+FNS RLSFFS+ICEEGESI RETLKT TCLSEAPQTS DDLL+LEE ++NS AKS++ LH
Subjt: MMGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLH
Query: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQK
YG+K+T PSKVEDNFSS TS+PTGKASPFG+LMENLDVLEETFAESGML LE+DIVLQLTKLGALE FNTCLSRTLKTSSFH LSDLP EDG +HNVNQK
Subjt: YGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQK
Query: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
TN N D+ V SGK AGRRSVK+RAMDNA+KVAS+PLAT A KE S+IFSRK+ SNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESG+IA+
Subjt: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
Query: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWA+AA V +K+LQKQLQFGW C+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
QIPWSLTKAINQIQKARK LN G RRY+DDDIA+ATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDI N+L+ L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
Query: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
ESRERQV+ LRYGL+DFQPKSLEEIGKLLH+SKEW RKIEKKAMTKLKNEETV+NLSHYL+
Subjt: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| A0A5A7VCX9 RNA polymerase sigma factor sigC | 2.6e-250 | 84.17 | Show/hide |
Query: PPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTG
P S V KGREA+FNS RLSFFS+ICEEGESI RETLKT TCLSEAPQTS DDLL+LEE ++NS AKS++ LHYG+K+T PSKVEDNFSS TS+PTG
Subjt: PPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTG
Query: KASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKER
KASPFG+LMENLDVLEETFAESGML LE+DIVLQLTKLGALE FNTCLSRTLKTSSFH LSDLP EDG +HNVNQKTN N D+ V SGK AGRRSVK+R
Subjt: KASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKER
Query: AMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWL
AMDNA+KVAS+PLAT A KE S+IFSRK+ SNSSKRRL+VARNEAEMSTG+KVVANLERIRETLEKESG+IA+MSCWA+AA V +K+LQKQLQFGW
Subjt: AMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWL
Query: CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGS
C+DELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LN G
Subjt: CQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGS
Query: RRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
RRY+DDDIA+ATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK++LMKKDI N+L+ LESRERQV+ LRYGL+DFQPKSLEE
Subjt: RRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
Query: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
IGKLLH+SKEW RKIEKKAMTKLKNEETV+NLSHYL+
Subjt: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.1e-258 | 84.34 | Show/hide |
Query: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
MGTS RPNLKW FQM HSRN S PSK P+ KGREASFNS+RLSFFSAICEEGES RETLKT TCLSEAPQTSADDLLDL+E +INSRA+ ++H HY
Subjt: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
Query: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK--TSSFHALSDLPNEDGGNHNVNQ
G+KNTGPSK+EDNFSS TSLPTGKAS FGMLMENLDVLEE F ESGML LE+DIVLQLTKLGALE FNTCLSRTLK TSSF LSDLP EDGG HNVNQ
Subjt: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK--TSSFHALSDLPNEDGGNHNVNQ
Query: KTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIA
KT+ N DI V SGK GRRS+KERA D A+KVASQP ATGAAKE F S+ F RKR NS +RRL+VARNEAEMSTGVKVVANLERIRETLEKES K A
Subjt: KTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIA
Query: NMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
+MSCWADAAG+ +K+L KQLQFGW CQ+ELLRSTNSLVLFLAKKYRC+GLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Subjt: NMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEA
IQIPWSLTKAINQIQKARKALNNGSRRY+DDDIAKATGLPLAKVRVA+NCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDI NLLE
Subjt: IQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEA
Query: LESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
LE RERQV+ALRYGL DFQPKSLEEIGKLLH+SKEW RKIEKKAMTKLKNEET NL HYL+
Subjt: LESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 2.3e-251 | 82.17 | Show/hide |
Query: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
MGTS RPNLKW FQ+ HSR AS PSKLSPY KGREASFNS RLSFFS+ CEEGE+I RE LKT TCLSEAPQT AD LLDLEE +INS AKS++HLHY
Subjt: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLEETKINSRAKSVNHLHY
Query: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVNQK
G KN+GPSKVEDNF S TSLPTG+ASPF MLMENLDVLEETF ESGML LE+DIVLQLTKLGALE FN CLSRTLK +SSF LSDLP E GG+HNVNQK
Subjt: GMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVNQK
Query: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
T+ N +I V SGK AGRRSVK RAMDNA+KVAS+PLAT AAKE FR SRK+ SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESG+ A+
Subjt: TNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIAN
Query: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADA+ + +K+LQKQLQFGW CQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGI
Subjt: MSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
QIPWSLTKAINQIQKARKALNN RRY+DDD+AKATGLPLAKVRVA+NCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDI NLLE L
Subjt: QIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEAL
Query: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
ESRERQV+ LRYGL+D QPKSLEEIGKLL +SKEW RKIE+KA TKLKNEETVRNLSHYL+
Subjt: ESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 5.7e-250 | 81.88 | Show/hide |
Query: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLE--ETKINSRAKSVNHL
MGTS RPNLKW FQ+ HSR AS PSKLSPY KGREASFNS RLSFFS+ CEEGE+I RE LKT TCLSEAPQT AD LLDLE E +INS AKS++HL
Subjt: MGTSLRPNLKWGFQMNPHSRNASPPSKLSPYVFKGREASFNSSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDLLDLE--ETKINSRAKSVNHL
Query: HYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVN
HYG KN+GPSKVEDNF S TSLPTG+ASPF MLMENLDVLEETF ESGML LE+DIVLQLTKLGALE FN CLSRTLK +SSF LSDLP E GG+HNVN
Subjt: HYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEETFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLK-TSSFHALSDLPNEDGGNHNVN
Query: QKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKI
QKT+ N +I V SGK AGRRSVK RAMDNA+KVAS+PLAT AAKE FR SRK+ SNS KRR IVARNEAEMSTGVKVVANLERIRETLEKESG+
Subjt: QKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKI
Query: ANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
A+MSCWADA+ + +K+LQKQLQFGW CQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGV+RFDPKRGFRFSTYIQYWIRKSMSRVVAR+SR
Subjt: ANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
Query: GIQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLE
GIQIPWSLTKAINQIQKARKALNN RRY+DDD+AKATGLPLAKVRVA+NCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVK++LMKKDI NLLE
Subjt: GIQIPWSLTKAINQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLE
Query: ALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
LESRERQV+ LRYGL+D QPKSLEEIGKLL +SKEW RKIE+KA TKLKNEETVRNLSHYL+
Subjt: ALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYLN
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 4.0e-51 | 30.36 | Show/hide |
Query: TLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMD-NANKVASQPLATGAAKENFRKSSIFS----RKRGSNSSKRRLIVAR
T S+ ++ DL +E V P+ + V S + R++ + + ++ A+ + S + K+ + R +S +L+ R
Subjt: TLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMD-NANKVASQPLATGAAKENFRKSSIFS----RKRGSNSSKRRLIVAR
Query: NEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRF
E E+S G++ + LER++ L + SG+ + WA AAGV K L++++ G LC+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G ++F
Subjt: NEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRF
Query: DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKY
D +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + ++ K S+DQK+G N+K
Subjt: DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKY
Query: MEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
E AD + E+ + ++ M++D+ +L++L +RE+QV+ R+G+ D + K+L+EIG+++ +S+E R+IE A KLKN++ +L YL
Subjt: MEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
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| O24621 RNA polymerase sigma factor sigC | 1.8e-115 | 45.21 | Show/hide |
Query: SSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDL-LDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEE
++R SF S++ EE ++LK C C S +P T+ +++ ++L++ K +N G E ++SS + L + +L +NL LEE
Subjt: SSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDL-LDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEE
Query: TFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGA
TF +R+E+DI+LQ+ KLGA ELF TCLSR +S LSD PN + V S + +++ + +S P+
Subjt: TFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGA
Query: AKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLA
N + +R K+R ++RNE EMSTGVK+VA++ERIR LE+ESGK+A++SCWA AAG+ K L + L +GW C+DEL++ST SLVLFLA
Subjt: AKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLA
Query: KKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYTDDDIAKATGLP
+ YR G+ EDL+QAG VGVLQG +RFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + D++IAK TG
Subjt: KKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYTDDDIAKATGLP
Query: LAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKI
+ K+R AN CLKVVGS+D+K+GD K++EFT DT+++SPEE V ++ ++DIH+LLE LE RE+QV+ LRYGL D++PKSLEEIGKLL +SKEW RKI
Subjt: LAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKI
Query: EKKAMTKLKNEETVRNLSHYLN
E++AM KL+++ +L +YLN
Subjt: EKKAMTKLKNEETVRNLSHYLN
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| P26683 RNA polymerase sigma factor SigA | 3.4e-42 | 30.93 | Show/hide |
Query: ANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDE
+ K A T + K+++ + SI R + RL+ A E E++ + + LER+RE L ++ + S WA+A + + + +L G +D+
Subjt: ANKVASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDE
Query: LLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNG-SRRY
+++S LV+ +AKKY GL +DL+Q G++G+++ ++FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+ R+
Subjt: LLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNG-SRRY
Query: TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGK
T+++IA + + K+R ++ S++ +G + + +F ++ ++PE+ V + L+++D+ +L++L RER V+ LRYGL D + K+LEEIG+
Subjt: TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGK
Query: LLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
+ ++++E R+IE KA+ KL++ L Y+
Subjt: LLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 2.2e-41 | 31.27 | Show/hide |
Query: AMDNANKVASQPLATGAAKENFRKSSIFS--RKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFG
A+D+ + V A AK RK+ R + RL+ A E E++ + + LERIR+ L ++ ++ + + WA A + E +++L G
Subjt: AMDNANKVASQPLATGAAKENFRKSSIFS--RKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFG
Query: WLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNN
+D++++S LV+ +AKKY GL +DL+Q G++G+++ ++FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+
Subjt: WLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNN
Query: G-SRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKS
R+ T+++IA + + K+R ++ S++ +G + + +F + ++PE+ V + L+++D+ +L L RER V+ LRYGL D + K+
Subjt: G-SRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKS
Query: LEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
LEEIG+L ++++E R+IE KA+ KL++ L Y+
Subjt: LEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.1e-40 | 29.53 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGV
++L+ A+ EAE+ + ++ + LE+++ LE ++G + WA+A G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGV
Query: LQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-ALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMG
++ V++F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARK + G+ R + +++A G+ K+ + S+ Q +
Subjt: LQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-ALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMG
Query: DGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
+ + E T D+ I++P +V ++LM+ + NLL L +ER+++ LR+G+ + +SL EIG++ +SKE R++E +A+ +LK L Y
Subjt: DGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 2.9e-52 | 30.36 | Show/hide |
Query: TLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMD-NANKVASQPLATGAAKENFRKSSIFS----RKRGSNSSKRRLIVAR
T S+ ++ DL +E V P+ + V S + R++ + + ++ A+ + S + K+ + R +S +L+ R
Subjt: TLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMD-NANKVASQPLATGAAKENFRKSSIFS----RKRGSNSSKRRLIVAR
Query: NEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRF
E E+S G++ + LER++ L + SG+ + WA AAGV K L++++ G LC+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G ++F
Subjt: NEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRF
Query: DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKY
D +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + + ++ +++IA+ATGL + ++ K S+DQK+G N+K
Subjt: DPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSRRY-TDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKY
Query: MEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
E AD + E+ + ++ M++D+ +L++L +RE+QV+ R+G+ D + K+L+EIG+++ +S+E R+IE A KLKN++ +L YL
Subjt: MEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHYL
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| AT1G64860.1 sigma factor A | 4.9e-28 | 28.05 | Show/hide |
Query: CSGKGAGRRSVKERAMDNANKV-ASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAG
CSG A +R + + N V A +++G + K I S + V R ++ +G+++ + R+++ L E A +
Subjt: CSGKGAGRRSVKERAMDNANKV-ASQPLATGAAKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAG
Query: VGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKA
+ ELQ L L +++L S LV+ +A++Y G M DLVQ G +G+L+G+++FD +GFR STY+ +WIR+ +SR + NSR +++P L +
Subjt: VGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKA
Query: INQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLN----MKYMEFTADTSIQ-SPEETVKQKLMKKDIHNLLEA-LESR
+ I+ A+ L + D IA++ + KVR A + V S+D+ LN + + ADT ++ +P +K+++ L+ A L R
Subjt: INQIQKARKALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLN----MKYMEFTADTSIQ-SPEETVKQKLMKKDIHNLLEA-LESR
Query: ERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNL
E++++ L YGL D + + E+I K + +S+E R++ A+ KLK+ R +
Subjt: ERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNL
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| AT2G36990.1 RNApolymerase sigma-subunit F | 7.8e-42 | 29.53 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGV
++L+ A+ EAE+ + ++ + LE+++ LE ++G + WA+A G+ L+ + G +++L+ + LV+ +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGV
Query: LQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-ALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMG
++ V++F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARK + G+ R + +++A G+ K+ + S+ Q +
Subjt: LQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK-ALNNGSRRYTDDDIAKATGLPLAKVRVANNCLKVVGSVDQKMG
Query: DGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
+ + E T D+ I++P +V ++LM+ + NLL L +ER+++ LR+G+ + +SL EIG++ +SKE R++E +A+ +LK L Y
Subjt: DGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.3e-116 | 45.21 | Show/hide |
Query: SSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDL-LDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEE
++R SF S++ EE ++LK C C S +P T+ +++ ++L++ K +N G E ++SS + L + +L +NL LEE
Subjt: SSRLSFFSAICEEGESICRETLKTCTCLSEAPQTSADDL-LDLEETKINSRAKSVNHLHYGMKNTGPSKVEDNFSSYTSLPTGKASPFGMLMENLDVLEE
Query: TFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGA
TF +R+E+DI+LQ+ KLGA ELF TCLSR +S LSD PN + V S + +++ + +S P+
Subjt: TFAESGMLRLEQDIVLQLTKLGALELFNTCLSRTLKTSSFHALSDLPNEDGGNHNVNQKTNGPNADIKVCSGKGAGRRSVKERAMDNANKVASQPLATGA
Query: AKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLA
N + +R K+R ++RNE EMSTGVK+VA++ERIR LE+ESGK+A++SCWA AAG+ K L + L +GW C+DEL++ST SLVLFLA
Subjt: AKENFRKSSIFSRKRGSNSSKRRLIVARNEAEMSTGVKVVANLERIRETLEKESGKIANMSCWADAAGVGMKELQKQLQFGWLCQDELLRSTNSLVLFLA
Query: KKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYTDDDIAKATGLP
+ YR G+ EDL+QAG VGVLQG +RFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L ++G + D++IAK TG
Subjt: KKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKAL--NNGSRRYTDDDIAKATGLP
Query: LAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKI
+ K+R AN CLKVVGS+D+K+GD K++EFT DT+++SPEE V ++ ++DIH+LLE LE RE+QV+ LRYGL D++PKSLEEIGKLL +SKEW RKI
Subjt: LAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEEIGKLLHISKEWARKI
Query: EKKAMTKLKNEETVRNLSHYLN
E++AM KL+++ +L +YLN
Subjt: EKKAMTKLKNEETVRNLSHYLN
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| AT5G13730.1 sigma factor 4 | 6.0e-34 | 34.47 | Show/hide |
Query: QDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSR
++++ R LV+ +A Y+ GL ++DL+Q G++G+L+G +RFDP RG++ STY+ +WI++++ R +A SR +++P S+ + ++ +A L R
Subjt: QDELLRSTNSLVLFLAKKYRCSGLPMEDLVQAGAVGVLQGVDRFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKALNNGSR
Query: RYTD-DDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
R ++IA+ L ++ VR+A + S+D+ M E PEE VK++ MK +I LL +L +RE +V+ L +GL P S EE
Subjt: RYTD-DDIAKATGLPLAKVRVANNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKQKLMKKDIHNLLEALESRERQVVALRYGLIDFQPKSLEE
Query: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
IGK L +S+E R+I A+ KL+N V +L Y
Subjt: IGKLLHISKEWARKIEKKAMTKLKNEETVRNLSHY
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