CuGenDBv2

Gene ID	Sed0019500
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L35
Genome location	LG04:39945833..39947630
RNA-Seq Expression	Sed0019500
Synteny	Sed0019500
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001854 - Ribosomal protein L29/L35 IPR036049 - Ribosomal protein L29/L35 superfamily IPR045059 - 60S ribosomal protein L35

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601021.1 Spliceosome-associated protein 130 B, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-51

97.56

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

KAG7031634.1 60S ribosomal protein L35, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-51

97.56

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

XP_022134532.1 60S ribosomal protein L35 [Momordica charantia]

2.1e-50

95.12

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTER+KKKEMY+PLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

XP_022939961.1 60S ribosomal protein L35 [Cucurbita moschata]

1.5e-51

97.56

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

XP_023549703.1 60S ribosomal protein L35-like [Cucurbita pepo subsp. pepo]

9.4e-51

95.93

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK K DLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRR+LTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQT2 Uncharacterized protein

2.3e-50

95.12

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLL QLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTER+KKKEMY+PLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

A0A6J1BZV3 60S ribosomal protein L35

1.0e-50

95.12

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTER+KKKEMY+PLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

A0A6J1E5L3 60S ribosomal protein L35-like

1.0e-50

95.93

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SL TER+KKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

A0A6J1FH81 60S ribosomal protein L35

7.0e-52

97.56

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

A0A6J1JVN4 60S ribosomal protein L35

7.0e-52

97.56

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMYYPLRKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

SwissProt top hits

e value

%identity

Alignment

O80626 60S ribosomal protein L35-2

1.1e-49

89.43

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+K KADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Q9LZ41 60S ribosomal protein L35-4

4.1e-49

88.62

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR K K DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Q9M3D2 60S ribosomal protein L35-3

1.2e-48

87.8

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR K K+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKK+MY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Q9M5L0 60S ribosomal protein L35

3.7e-50

90.24

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Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELRQK KA+LL QLKDLKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ 
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Q9SF53 60S ribosomal protein L35-1

2.4e-49

88.62

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+K K+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Arabidopsis top hits

e value

%identity

Alignment

AT2G39390.1 Ribosomal L29 family protein

7.7e-51

89.43

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+K KADL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

AT3G09500.1 Ribosomal L29 family protein

1.7e-50

88.62

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR+K K+DL  QLK+LKAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

AT3G55170.1 Ribosomal L29 family protein

8.5e-50

87.8

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR K K+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKK+MY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

AT3G55170.2 Ribosomal L29 family protein

8.5e-50

87.8

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR K K+DL TQLK+LKAEL+ LRVAKVTGGAPNKLSKIKVV+ SIAQVLTV SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKK+MY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

AT5G02610.1 Ribosomal L29 family protein

2.9e-50

88.62

Show/hide

Query:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA
        MARIKVHELR K K DL  QLK+ KAEL+LLRVAKVTGGAPNKLSKIKVV+ SIAQVLTVISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQA
Subjt:  MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQA

Query:  SLKTEREKKKEMYYPLRKYAIKV
        SLKTEREKKKEMY+P+RKYAIKV
Subjt:  SLKTEREKKKEMYYPLRKYAIKV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCAGAATTAAGGTTCACGAGCTTAGACAGAAGCCAAAGGCGGATCTTTTGACCCAGCTCAAAGACCTTAAGGCGGAGCTTTCTCTTCTCCGCGTTGCCAAGGTCAC
TGGCGGTGCTCCCAACAAGCTCTCCAAAATTAAGGTGGTGAAGACGTCAATTGCCCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTCTTAGGGAAGCTTACA
AGAAGAAGAAGCTGTTGCCTCTTGATTTGCGTCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCCTCTTTGAAGACTGAGCGAGAGAAGAAGAAA
GAGATGTACTACCCGTTGAGGAAATACGCTATCAAGGTGTAG

mRNA sequence

Show/hide mRNA sequence

CTTCAACCTAGGGTTTTTCAAGTTGCAGACCATCGCCAAATCCCCAAACACACAGCCGCCAGTCTCGACGCACCTTATTCCAATGGCCAGAATTAAGGTTCACGAGCTTA
GACAGAAGCCAAAGGCGGATCTTTTGACCCAGCTCAAAGACCTTAAGGCGGAGCTTTCTCTTCTCCGCGTTGCCAAGGTCACTGGCGGTGCTCCCAACAAGCTCTCCAAA
ATTAAGGTGGTGAAGACGTCAATTGCCCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAGCTGTTGCCTCTTGATTT
GCGTCCCAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGCCTCTTTGAAGACTGAGCGAGAGAAGAAGAAAGAGATGTACTACCCGTTGAGGAAATACG
CTATCAAGGTGTAGGCTTAGGTAGCCAATTGATTGAGCAATCTTTGGTATCATGCATCTTTACTCATTTTGACCTTTTGATTCATCTATTATAATGTTATTGTTCAGACT
TAAAATTTATTTTCAATCTTATTTTATTAGAACTCTGAACTTTCATCTTTCCTTTTCCATGTAATACCTAGCGTTTTCCAATTTAGAATGAAATGGTTTTGGTTAATGTT
TCTAGGCATTTTTGGCTGGTCTTAAAACGTATCTGTGCTGTGTATGTTTGAGCTTTTTATCTGTATTTGAGATTTTGATGGTTCAAACTGTAAATCTGCAGTTGAATGTT
TCTTTTTAACAGAACTTAAATTTGGATGA

Protein sequence

Show/hide protein sequence

MARIKVHELRQKPKADLLTQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVKTSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKK
EMYYPLRKYAIKV

Sed0019500 (gene) of Chayote v1 genome