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Sed0019507 (gene) of Chayote v1 genome

Gene IDSed0019507
OrganismSechium edule (Chayote v1)
DescriptionElf4 domain-containing protein
Genome locationLG04:40651068..40651421
RNA-Seq ExpressionSed0019507
SyntenySed0019507
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]7.4e-3773.44Show/hide
Query:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY
        ++NN RRKSK KPSATTT               FP+E D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+Y
Subjt:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY

Query:  SHFSSDFSTAFNS------KRGTTNQDA
        S FSSDFSTAF++      KRGTTN DA
Subjt:  SHFSSDFSTAFNS------KRGTTNQDA

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3874.4Show/hide
Query:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF
        N RRKSK+KPSATTT           R  GFP+ECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+YS F
Subjt:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF

Query:  SSDFSTAFNS------KRGTTNQDA
        SSDFS+ FN+      KRG++N DA
Subjt:  SSDFSTAFNS------KRGTTNQDA

XP_022156910.1 protein EARLY FLOWERING 4-like [Momordica charantia]2.3e-3878.63Show/hide
Query:  SNNNLRRKSKSKPSATTTR------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSS
        ++NN RRKSK+KPSATTT       DGGF +E D EVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVS+YS FSS
Subjt:  SNNNLRRKSKSKPSATTTR------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSS

Query:  DFSTAF-NSKRGTTNQD
        DFS++F N KRG++NQ+
Subjt:  DFSTAF-NSKRGTTNQD

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]3.0e-3874.4Show/hide
Query:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF
        N RRKSK+KPSATTT           R  GFP+ECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+YS F
Subjt:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF

Query:  SSDFSTAFNS------KRGTTNQDA
        SSDFS+ FN+      KRG++N DA
Subjt:  SSDFSTAFNS------KRGTTNQDA

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]5.1e-3874.4Show/hide
Query:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF
        N RRKSK+KPSATTT           R  GFP+ECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+YS F
Subjt:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF

Query:  SSDFSTAFNS------KRGTTNQDA
        SSDFS+ FN+      KRG++N DA
Subjt:  SSDFSTAFNS------KRGTTNQDA

TrEMBL top hitse value%identityAlignment
A0A1S3CIT1 uncharacterized protein LOC1035014403.6e-3773.44Show/hide
Query:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY
        ++NN RRKSK KPSATTT               FP+E D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+Y
Subjt:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY

Query:  SHFSSDFSTAFNS------KRGTTNQDA
        S FSSDFSTAF++      KRGTTN DA
Subjt:  SHFSSDFSTAFNS------KRGTTNQDA

A0A5A7SR92 Protein EARLY FLOWERING 43.6e-3773.44Show/hide
Query:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY
        ++NN RRKSK KPSATTT               FP+E D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+Y
Subjt:  SNNNLRRKSKSKPSATTTR-----------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIY

Query:  SHFSSDFSTAFNS------KRGTTNQDA
        S FSSDFSTAF++      KRGTTN DA
Subjt:  SHFSSDFSTAFNS------KRGTTNQDA

A0A6J1DRN5 protein EARLY FLOWERING 4-like1.1e-3878.63Show/hide
Query:  SNNNLRRKSKSKPSATTTR------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSS
        ++NN RRKSK+KPSATTT       DGGF +E D EVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSR+PSNMVDNVALIQELNGNISKVVS+YS FSS
Subjt:  SNNNLRRKSKSKPSATTTR------DGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSS

Query:  DFSTAF-NSKRGTTNQD
        DFS++F N KRG++NQ+
Subjt:  DFSTAF-NSKRGTTNQD

A0A6J1GYX8 protein EARLY FLOWERING 4-like1.4e-3874.4Show/hide
Query:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF
        N RRKSK+KPSATTT           R  GFP+ECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+YS F
Subjt:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF

Query:  SSDFSTAFNS------KRGTTNQDA
        SSDFS+ FN+      KRG++N DA
Subjt:  SSDFSTAFNS------KRGTTNQDA

A0A6J1IH33 protein EARLY FLOWERING 4-like2.5e-3874.4Show/hide
Query:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF
        N RRKSK+KPSATTT           R  GFP+ECD +VWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS+YS F
Subjt:  NLRRKSKSKPSATTT-----------RDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHF

Query:  SSDFSTAFNS------KRGTTNQDA
        SSDFS+ FN+      KRG++N DA
Subjt:  SSDFSTAFNS------KRGTTNQDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 46.5e-2057.45Show/hide
Query:  KPSATTTRDGGFPEEC----DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFN
        K +  T R     EE     D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV++YS  ++ FS+ F+
Subjt:  KPSATTTRDGGFPEEC----DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFN

O80877 Protein ELF4-LIKE 17.4e-1653.75Show/hide
Query:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNSKRGTT
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ IYS  S +F+  F+ +R TT
Subjt:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNSKRGTT

Q570U6 Protein ELF4-LIKE 46.5e-1244Show/hide
Query:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        DG++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y   S  F+ + ++
Subjt:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

Q8S8F5 Protein ELF4-LIKE 31.2e-1341.38Show/hide
Query:  TTTRDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        T +R  G   + DG++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y   S++FS +  +
Subjt:  TTTRDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

Q94BS8 Protein ELF4-LIKE 21.2e-1040.96Show/hide
Query:  GFPE--ECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        GF E  + DG++  +F ++F QVQ +LD+NR+LI ++N+NH+S+   ++  NV LI+ELN NI  V S+Y   S  F+ + ++
Subjt:  GFPE--ECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 44.6e-1344Show/hide
Query:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        DG++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y   S  F+ + ++
Subjt:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

AT1G17455.2 ELF4-like 44.6e-1344Show/hide
Query:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        DG++  SF ++F  VQ +LD+NR+LI ++N+NH+S+ P N+  NV LI+ELN NI +V S+Y   S  F+ + ++
Subjt:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

AT2G06255.1 ELF4-like 38.4e-1541.38Show/hide
Query:  TTTRDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS
        T +R  G   + DG++  +F+++F QVQ++LD NR+LI ++N+NH+S+IP N+  NV LI+ELN N+ +V  +Y   S++FS +  +
Subjt:  TTTRDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNS

AT2G29950.1 ELF4-like 15.3e-1753.75Show/hide
Query:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNSKRGTT
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ IYS  S +F+  F+ +R TT
Subjt:  DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNSKRGTT

AT2G40080.1 Protein of unknown function (DUF1313)4.6e-2157.45Show/hide
Query:  KPSATTTRDGGFPEEC----DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFN
        K +  T R     EE     D  +W + D+ FRQVQSVLDRNR LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV++YS  ++ FS+ F+
Subjt:  KPSATTTRDGGFPEEC----DGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACAACAATAACAGCAACAACAACCTCCGCCGCAAATCCAAATCGAAGCCGTCGGCAACCACCACCAGAGACGGCGGCTTCCCGGAGGAATGCGACGGCGAGGT
GTGGGCCTCCTTCGACCAGACATTCCGGCAGGTCCAGTCAGTGCTGGACCGAAACAGAGTACTGATTCAGCAGGTGAACGAGAATCACCAGTCTCGAATTCCGAGCAACA
TGGTCGACAACGTGGCCCTCATCCAAGAACTCAACGGCAACATCTCCAAAGTTGTCTCTATCTACTCCCATTTCTCCTCCGATTTCTCCACCGCCTTCAATTCCAAAAGG
GGTACCACAAACCAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACAACAATAACAGCAACAACAACCTCCGCCGCAAATCCAAATCGAAGCCGTCGGCAACCACCACCAGAGACGGCGGCTTCCCGGAGGAATGCGACGGCGAGGT
GTGGGCCTCCTTCGACCAGACATTCCGGCAGGTCCAGTCAGTGCTGGACCGAAACAGAGTACTGATTCAGCAGGTGAACGAGAATCACCAGTCTCGAATTCCGAGCAACA
TGGTCGACAACGTGGCCCTCATCCAAGAACTCAACGGCAACATCTCCAAAGTTGTCTCTATCTACTCCCATTTCTCCTCCGATTTCTCCACCGCCTTCAATTCCAAAAGG
GGTACCACAAACCAAGATGCTTGA
Protein sequenceShow/hide protein sequence
MADNNNSNNNLRRKSKSKPSATTTRDGGFPEECDGEVWASFDQTFRQVQSVLDRNRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSIYSHFSSDFSTAFNSKR
GTTNQDA