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Sed0019528 (gene) of Chayote v1 genome

Gene IDSed0019528
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor UPBEAT1-like
Genome locationLG11:34453316..34453869
RNA-Seq ExpressionSed0019528
SyntenySed0019528
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039441.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.1e-2662.71Show/hide
Query:  MSSKSNTIPNPLRNL-RTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQK
        MSSK+NT+PNPLRN  R +TKRS   SRRRF RRH            CS +VS +LEALQ LIPP  AA HG+PR  ++LFK+TADYIV+LKTQ ++LQK
Subjt:  MSSKSNTIPNPLRNL-RTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQK

Query:  LVDFFGSACNDAENAVVS
        LVDFFGSAC+D+ +AVVS
Subjt:  LVDFFGSACNDAENAVVS
KAG5535181.1 hypothetical protein RHGRI_023087 [Rhododendron griersonianum]6.2e-1152.53Show/hide
Query:  RNLRTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDA
        R +R  T+R     RRR RR              CS  VS +LEAL+ LIP H   A+GE R P+QLF+ETADYIVLLKTQ L+LQ+LVDF+GS  N A
Subjt:  RNLRTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDA
KAG6578552.1 hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]1.5e-1757.63Show/hide
Query:  MSSKSNTIPNPLRNLRTKTKRSPPDSRRRFRRRHCS-----------------------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVL
        MS K+NT    L NLRT TKRS PDSRRRF RRH S                       DDVS +LEALQ LIP    A   E R  EQLFKETADYIVL
Subjt:  MSSKSNTIPNPLRNLRTKTKRSPPDSRRRFRRRHCS-----------------------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVL

Query:  LKTQALVLQKLVDFFGSA
        LKTQ ++LQKLVDFFGSA
Subjt:  LKTQALVLQKLVDFFGSA
KAG7016112.1 hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-1757.63Show/hide
Query:  MSSKSNTIPNPLRNLRTKTKRSPPDSRRRFRRRHCS-----------------------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVL
        MS K+NT    L NLRT TKRS PDSRRRF RRH S                       DDVS +LEALQ LIP    A   E R  EQLFKETADYIVL
Subjt:  MSSKSNTIPNPLRNLRTKTKRSPPDSRRRFRRRHCS-----------------------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVL

Query:  LKTQALVLQKLVDFFGSA
        LKTQ ++LQKLVDFFGSA
Subjt:  LKTQALVLQKLVDFFGSA
XP_022993697.1 uncharacterized protein LOC111489609 [Cucurbita maxima]1.0e-1357.84Show/hide
Query:  LRNLRTKTKRSPPDSRRRFRRRH----------CS--------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFG
        L NLRT+TKRS PDS  R    H          CS        DDVS +LEALQ LIP    A   E R  EQLFKETADYIVLLKTQ ++LQKLVDFFG
Subjt:  LRNLRTKTKRSPPDSRRRFRRRH----------CS--------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFG

Query:  SA
        SA
Subjt:  SA
TrEMBL top hitse value%identityAlignment
A0A2G9GH99 Uncharacterized protein1.8e-0843.27Show/hide
Query:  NTIPNPLRNLRTKTKRS------PPDSRRRFRRRHCSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDA
        +T    +R LR K+  S      P    RR    H    VS +LEAL+ LIP     +      P+QLF+E ADYIVLLKTQ  VLQKL+DF+GS   + 
Subjt:  NTIPNPLRNLRTKTKRS------PPDSRRRFRRRHCSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDA

Query:  ENAV
        +N V
Subjt:  ENAV
A0A2P5AW87 Transcription factor UPBEAT-like protein8.2e-0956.52Show/hide
Query:  CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAENAV
        CS  VS +LEAL+ LIP H     GE    +QLF++TADYIVLL+TQ ++LQKL++F+GSA  D+E+AV
Subjt:  CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAENAV
A0A2P5ED64 Uncharacterized protein6.3e-0956.52Show/hide
Query:  CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAENAV
        CS  VS +LEAL+ LIP H     GE    +QLF++TADYIVLL+TQ ++LQKL++F+GSA  D+E+AV
Subjt:  CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAENAV
A0A5D3BNP5 Transcription factor UPBEAT1-like5.1e-2762.71Show/hide
Query:  MSSKSNTIPNPLRNL-RTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQK
        MSSK+NT+PNPLRN  R +TKRS   SRRRF RRH            CS +VS +LEALQ LIPP  AA HG+PR  ++LFK+TADYIV+LKTQ ++LQK
Subjt:  MSSKSNTIPNPLRNL-RTKTKRSPPDSRRRFRRRH------------CSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQK

Query:  LVDFFGSACNDAENAVVS
        LVDFFGSAC+D+ +AVVS
Subjt:  LVDFFGSACNDAENAVVS
A0A6J1JTK8 uncharacterized protein LOC1114896095.0e-1457.84Show/hide
Query:  LRNLRTKTKRSPPDSRRRFRRRH----------CS--------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFG
        L NLRT+TKRS PDS  R    H          CS        DDVS +LEALQ LIP    A   E R  EQLFKETADYIVLLKTQ ++LQKLVDFFG
Subjt:  LRNLRTKTKRSPPDSRRRFRRRH----------CS--------DDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFG

Query:  SA
        SA
Subjt:  SA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein2.2e-0633.65Show/hide
Query:  LRNLRTKT----KRSPPDSRRRFRRRHCSD-------DVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAE
        +R L+T+T    +R+   SR R     C +        V  +L AL+ L+PP      GE    E+LF+ETA+YIV L+TQ +VL+KL++ + ++ +  +
Subjt:  LRNLRTKT----KRSPPDSRRRFRRRHCSD-------DVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAE

Query:  NAVV
        + V+
Subjt:  NAVV
AT5G39240.1 unknown protein2.6e-0735.85Show/hide
Query:  LRNLRTKTKRSPPDSRRRFRRRHCS--DDVSPRLEALQILIPPHPAAAHGEPRL------------PEQLFKETADYIVLLKTQALVLQKLVDFFGSACN
        +R L+T+  R    + ++F  R  S  +  S +L+AL+ L+PP P+    + R              EQLF+ETADYIV L+ Q +VLQKL++ +GS+  
Subjt:  LRNLRTKTKRSPPDSRRRFRRRHCS--DDVSPRLEALQILIPPHPAAAHGEPRL------------PEQLFKETADYIVLLKTQALVLQKLVDFFGSACN

Query:  DAENAV
          +N V
Subjt:  DAENAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCAAATCCAACACAATTCCAAATCCTCTCAGAAATCTCAGAACAAAAACCAAACGATCTCCGCCGGATTCCCGCCGCCGCTTCCGCCGCCGTCACTGCTCCGA
CGACGTCTCGCCCAGGTTGGAGGCCCTGCAGATCCTCATTCCGCCACATCCCGCCGCTGCCCACGGCGAGCCTCGCCTGCCGGAGCAGTTGTTCAAGGAAACCGCCGATT
ACATTGTTCTTTTGAAAACCCAGGCCCTCGTTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAACGACGCTGAAAACGCCGTTGTTTCATAG
mRNA sequenceShow/hide mRNA sequence
CAAAACCGCTCCGAGAAATTGGAGACAAAAAAAAAAAAAAAATGAGCTCCAAATCCAACACAATTCCAAATCCTCTCAGAAATCTCAGAACAAAAACCAAACGATCTCCG
CCGGATTCCCGCCGCCGCTTCCGCCGCCGTCACTGCTCCGACGACGTCTCGCCCAGGTTGGAGGCCCTGCAGATCCTCATTCCGCCACATCCCGCCGCTGCCCACGGCGA
GCCTCGCCTGCCGGAGCAGTTGTTCAAGGAAACCGCCGATTACATTGTTCTTTTGAAAACCCAGGCCCTCGTTTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCA
ACGACGCTGAAAACGCCGTTGTTTCATAGTTCTATTTCTTTTTCTTTTTTTTTTCTTGTGTAATTATGAGAGAAATAAATCAAGAAGAGGGATGAAAATGACGATGTTGT
CCCTTCCTTTGCTCATGTTTTTTTGTTCCAATTGAGTCTGTTTGGTTGATAGAAAAGTGAAAGAAAATTGGAGAAATGGAATATTATTACATTAATTTATCTTCTTCTTA
TGGC
Protein sequenceShow/hide protein sequence
MSSKSNTIPNPLRNLRTKTKRSPPDSRRRFRRRHCSDDVSPRLEALQILIPPHPAAAHGEPRLPEQLFKETADYIVLLKTQALVLQKLVDFFGSACNDAENAVVS