CuGenDBv2

Gene ID	Sed0019530
Organism	Sechium edule (Chayote v1)
Description	(S)-2-hydroxy-acid oxidase
Genome location	LG10:767974..771655
RNA-Seq Expression	Sed0019530
Synteny	Sed0019530
Gene Ontology terms	GO:0009854 - oxidative photosynthetic carbon pathway (biological process) GO:0005777 - peroxisome (cellular component) GO:0003973 - (S)-2-hydroxy-acid oxidase activity (molecular function) GO:0010181 - FMN binding (molecular function)
InterPro domains	IPR000262 - FMN-dependent dehydrogenase IPR013785 - Aldolase-type TIM barrel IPR037396 - FMN hydroxy acid dehydrogenase domain

Homology

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GenBank top hits

e value

%identity

Alignment

PNY16631.1 peroxisomal (S)-2-hydroxy-acid oxidase glo1, partial [Trifolium pratense]

8.1e-42

73.13

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSWQDVKWL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

XP_020091925.1 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [Ananas comosus]

4.8e-42

72.39

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +EDD+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        LNL KMD             +IDR+LSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

XP_020091927.1 peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X2 [Ananas comosus]

4.8e-42

72.39

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +EDD+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        LNL KMD             +IDR+LSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

XP_024633287.1 peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 [Medicago truncatula]

6.2e-42

73.13

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        LNL KMDE             IDRTLSW+DVKWL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

XP_024633288.1 peroxisomal (S)-2-hydroxy-acid oxidase isoform X2 [Medicago truncatula]

6.2e-42

73.13

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        LNL KMDE             IDRTLSW+DVKWL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

TrEMBL top hits

e value

%identity

Alignment

A0A072V9Z1 (S)-2-hydroxy-acid oxidase

3.0e-42

73.13

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        LNL KMDE             IDRTLSW+DVKWL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

A0A2K3PMX8 (S)-2-hydroxy-acid oxidase (Fragment)

3.9e-42

73.13

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSWQDVKWL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

A0A6J1ISV7 (S)-2-hydroxy-acid oxidase

8.8e-42

72.39

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        L+L KMD             +IDRTLSWQDVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

A0A6P5F8J6 (S)-2-hydroxy-acid oxidase

2.3e-42

72.39

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +EDD+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        LNL KMD             +IDR+LSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

A0A6P5FF95 (S)-2-hydroxy-acid oxidase

2.3e-42

72.39

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R EKAGFKAIALTVD PR G +EDD+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        LNL KMD             +IDR+LSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

SwissProt top hits

e value

%identity

Alignment

B8AKX6 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1

2.0e-43

70.9

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        L+LA+MD             +IDRTLSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

B8B7C5 Peroxisomal (S)-2-hydroxy-acid oxidase GLO5

1.7e-42

70.15

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+  V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        L L KMD             +IDRTLSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

Q10CE4 Peroxisomal (S)-2-hydroxy-acid oxidase GLO1

2.0e-43

70.9

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   D+N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMD-------------EIDRTLSWQDVKWL
        L+LA+MD             +IDRTLSW+DVKWL
Subjt:  LNLAKMD-------------EIDRTLSWQDVKWL

Q9LRR9 (S)-2-hydroxy-acid oxidase GLO1

4.5e-43

70.15

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

Q9LRS0 (S)-2-hydroxy-acid oxidase GLO2

1.3e-42

69.4

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Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++  V QLV R EKAGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+D++WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

Arabidopsis top hits

e value

%identity

Alignment

AT3G14420.1 Aldolase-type TIM barrel family protein

3.2e-44

70.15

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

AT3G14420.2 Aldolase-type TIM barrel family protein

3.2e-44

70.15

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

AT3G14420.3 Aldolase-type TIM barrel family protein

3.2e-44

70.15

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

AT3G14420.4 Aldolase-type TIM barrel family protein

3.2e-44

70.15

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

AT3G14420.5 Aldolase-type TIM barrel family protein

3.2e-44

70.15

Show/hide

Query:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG
        E ATARAASAA +IMTLS+WATSSVEEVASTGPGIRFFQLY+YK   ++N V QLV R E+AGFKAIALTVD PR G +E D+KNRF LPP LTLKNFEG
Subjt:  ELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEG

Query:  LNLAKMDE-------------IDRTLSWQDVKWL
        L+L KMDE             IDRTLSW+DV+WL
Subjt:  LNLAKMDE-------------IDRTLSWQDVKWL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACCCAAGGGAGTTAGCAACAGCCAGAGCAGCATCTGCAGCAAGCTCAATTATGACCCTTTCCACGTGGGCTACTTCCAGTGTGGAAGAAGTTGCTTCCACTGGACC
TGGCATTCGATTCTTCCAGCTATACATGTACAAGGATGGACTGGATAAAAATGCAGTGGTACAACTAGTGACAAGAGTAGAAAAGGCTGGTTTCAAAGCCATTGCTCTGA
CTGTCGACATACCGAGGCGCGGTCACAAAGAAGATGATGTCAAGAACAGGTTTGCTTTGCCACCACCTTTGACATTGAAGAACTTTGAGGGATTGAATCTTGCCAAAATG
GATGAGATCGACCGTACTCTCAGTTGGCAGGATGTGAAGTGGCTCTAG

mRNA sequence

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Protein sequence

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MNPRELATARAASAASSIMTLSTWATSSVEEVASTGPGIRFFQLYMYKDGLDKNAVVQLVTRVEKAGFKAIALTVDIPRRGHKEDDVKNRFALPPPLTLKNFEGLNLAKM
DEIDRTLSWQDVKWL

Sed0019530 (gene) of Chayote v1 genome