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Sed0019554 (gene) of Chayote v1 genome

Gene IDSed0019554
OrganismSechium edule (Chayote v1)
DescriptionDNA polymerase subunit gamma-1 like
Genome locationLG05:44316355..44316732
RNA-Seq ExpressionSed0019554
SyntenySed0019554
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3434655.1 hypothetical protein FNV43_RR21740 [Rhamnella rubrinervis]2.4e-3359.52Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSY-SIGGLINFRFRQLTTGSTR
        MEW  PKRRGPEWK GW  QTL S+S+PP  LLTIFGIVI LLWFSQ+TG++AQ+ ++T NFQL L +LPIL++F M+ Y S GG  NF+ R+      R
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSY-SIGGLINFRFRQLTTGSTR

Query:  RGASPWTIAILVPLILVLLYFRASFH
         G SPW +AIL+ L+LVLL +++SFH
Subjt:  RGASPWTIAILVPLILVLLYFRASFH

KAG7010871.1 hypothetical protein SDJN02_27669, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4274.8Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTL-GSVSSPPPQLLTIFGIVIFLLWFSQH-TGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGST
        MEWL+PKRRGPEWK  W  QTL GSVSSPPPQLLTIFGIVI LLWFSQ  TG++ Q++RS +NFQL+LFLLPILV+F MSSYS+ GLIN R  +  TGS 
Subjt:  MEWLQPKRRGPEWKHGWASQTL-GSVSSPPPQLLTIFGIVIFLLWFSQH-TGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGST

Query:  RRGASPWTIAILVPLILVLLYFRASFH
        RRGASP TI ILV LILVLLYFR SFH
Subjt:  RRGASPWTIAILVPLILVLLYFRASFH

KDP27587.1 hypothetical protein JCGZ_19592 [Jatropha curcas]5.3e-3356.69Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR-
        MEW  PKRRGP+WK GWA QT+ S+S+PPP LLTIFGIVI LLW SQ+TG++AQ+  S  NFQL +FLLPIL++ L++  S   ++ FR RQ    S R 
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR-

Query:  -RGASPWTIAILVPLILVLLYFRASFH
          G+SPW +AI V ++LVLL +++SFH
Subjt:  -RGASPWTIAILVPLILVLLYFRASFH

KGN61894.1 hypothetical protein Csa_005908 [Cucumis sativus]1.1e-3367.19Show/hide
Query:  MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGS
        M+   PKRRGPEWK G     QTL SVS PP QLL IFGIVI LLWFSQ + GHEAQ+ RS   FQL LFLLPI V+F M SYS   LINF FR+  TG 
Subjt:  MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGS

Query:  TRRGASPWTIAILVPLILVLLYFRASFH
         +RGASPWTIAILV LILVLLY+++SFH
Subjt:  TRRGASPWTIAILVPLILVLLYFRASFH

OAY52378.1 hypothetical protein MANES_04G078400v8 [Manihot esculenta]1.4e-3358.91Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTG
        MEW  PKRRGP+WKHGWASQTL S+S+ PPP LLTIF IVI LLW SQ+TG++AQ +++  NFQL LFLLPIL++FL++SYS   ++ FR RQ     + 
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTG

Query:  STRRGASPWTIAILVPLILVLLYFRASFH
        S   G+SPW IAI V ++LVLL ++++FH
Subjt:  STRRGASPWTIAILVPLILVLLYFRASFH

TrEMBL top hitse value%identityAlignment
A0A067JUL1 Uncharacterized protein2.6e-3356.69Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR-
        MEW  PKRRGP+WK GWA QT+ S+S+PPP LLTIFGIVI LLW SQ+TG++AQ+  S  NFQL +FLLPIL++ L++  S   ++ FR RQ    S R 
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTR-

Query:  -RGASPWTIAILVPLILVLLYFRASFH
          G+SPW +AI V ++LVLL +++SFH
Subjt:  -RGASPWTIAILVPLILVLLYFRASFH

A0A0A0LLH8 Uncharacterized protein5.1e-3467.19Show/hide
Query:  MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGS
        M+   PKRRGPEWK G     QTL SVS PP QLL IFGIVI LLWFSQ + GHEAQ+ RS   FQL LFLLPI V+F M SYS   LINF FR+  TG 
Subjt:  MEWLQPKRRGPEWKHG--WASQTLGSVSSPPPQLLTIFGIVIFLLWFSQ-HTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGS

Query:  TRRGASPWTIAILVPLILVLLYFRASFH
         +RGASPWTIAILV LILVLLY+++SFH
Subjt:  TRRGASPWTIAILVPLILVLLYFRASFH

A0A2C9W0P5 Uncharacterized protein6.7e-3458.91Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTG
        MEW  PKRRGP+WKHGWASQTL S+S+ PPP LLTIF IVI LLW SQ+TG++AQ +++  NFQL LFLLPIL++FL++SYS   ++ FR RQ     + 
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSS-PPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQ---LTTG

Query:  STRRGASPWTIAILVPLILVLLYFRASFH
        S   G+SPW IAI V ++LVLL ++++FH
Subjt:  STRRGASPWTIAILVPLILVLLYFRASFH

A0A2P5ED06 Transmembrane protein6.3e-3254.33Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFR--QLTTGST
        MEW  PKRRGP+WK GW SQT+ S+S+P   LL IF IV+ LLW SQ+TG++AQ+ ++  NFQL +FLLP+L++  M+SYS  GL NFRFR  +  T   
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFR--QLTTGST

Query:  RRGASPWTIAILVPLILVLLYFRASFH
          G+SPW +A  V L+LVLL +++SFH
Subjt:  RRGASPWTIAILVPLILVLLYFRASFH

B9STD1 Uncharacterized protein2.8e-3254.62Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTG----
        MEW  P+RRGPEWK GW  QTLGS+S PPP LL IFGIVI LLW SQ+T ++AQ++ S  NFQL LFLLP+L++ L++SYS   +  FR RQ  +G    
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTG----

Query:  -STRRGASPWTIAILVPLILVLLYFRASFH
         S    + PW IA  V ++LVLL +++SFH
Subjt:  -STRRGASPWTIAILVPLILVLLYFRASFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G42146.1 unknown protein1.5e-1431.54Show/hide
Query:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRR
        M W   +RRG  WK GW  +TL + S+PP  LL +  I+  LL+ S +  ++ +V ++ AN +L +  LPIL VF++ S S    + F+       +  +
Subjt:  MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRR

Query:  -----GASPWTIAILVPLILVLLYFRASFH
             G  PW + +++ L+L+L+  ++ FH
Subjt:  -----GASPWTIAILVPLILVLLYFRASFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGGCTACAACCAAAGAGGAGAGGACCAGAGTGGAAGCATGGATGGGCAAGCCAAACCCTAGGCTCTGTTTCTTCTCCCCCACCTCAATTGCTCACCATTTTTGG
CATTGTCATTTTCTTGCTTTGGTTCTCTCAGCACACAGGCCATGAAGCTCAAGTGTATAGATCAACTGCCAATTTCCAACTGGTTCTTTTCTTGCTGCCCATCTTGGTGG
TTTTCCTCATGTCTTCATATTCCATTGGTGGACTGATCAACTTCCGATTTCGGCAGCTGACTACCGGGTCGACTCGACGCGGTGCCTCGCCATGGACCATTGCCATTTTG
GTCCCTCTCATTCTGGTTTTGCTTTATTTCCGAGCCTCGTTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGGCTACAACCAAAGAGGAGAGGACCAGAGTGGAAGCATGGATGGGCAAGCCAAACCCTAGGCTCTGTTTCTTCTCCCCCACCTCAATTGCTCACCATTTTTGG
CATTGTCATTTTCTTGCTTTGGTTCTCTCAGCACACAGGCCATGAAGCTCAAGTGTATAGATCAACTGCCAATTTCCAACTGGTTCTTTTCTTGCTGCCCATCTTGGTGG
TTTTCCTCATGTCTTCATATTCCATTGGTGGACTGATCAACTTCCGATTTCGGCAGCTGACTACCGGGTCGACTCGACGCGGTGCCTCGCCATGGACCATTGCCATTTTG
GTCCCTCTCATTCTGGTTTTGCTTTATTTCCGAGCCTCGTTTCATTGA
Protein sequenceShow/hide protein sequence
MEWLQPKRRGPEWKHGWASQTLGSVSSPPPQLLTIFGIVIFLLWFSQHTGHEAQVYRSTANFQLVLFLLPILVVFLMSSYSIGGLINFRFRQLTTGSTRRGASPWTIAIL
VPLILVLLYFRASFH