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Sed0019563 (gene) of Chayote v1 genome

Gene IDSed0019563
OrganismSechium edule (Chayote v1)
DescriptionArabinogalactan peptide 23
Genome locationLG12:8848312..8848682
RNA-Seq ExpressionSed0019563
SyntenySed0019563
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]8.3e-0872.13Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M+MKKVTC VL+ AAAVSA MA+SEGPAPAP  SS  A AA PAVG FIGAS+ SFFA  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
KRH33040.1 hypothetical protein GLYMA_10G094600v4 [Glycine max]4.9e-0872.88Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+MKKVTC VLI AA++SAA+A++E PAPAPGPSSGA+AAA  AVG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
XP_007133088.1 hypothetical protein PHAVU_011G150500g [Phaseolus vulgaris]1.7e-0871.19Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+M+KVTC +LI AA+VSA MA++E PAPAPGPSSG A+AAFP VG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
XP_007133089.1 hypothetical protein PHAVU_011G150600g [Phaseolus vulgaris]4.9e-0869.49Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+M+KVTC +LI AA+VSA +A++E PAPAPGPSSG A+AAFP VG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]6.8e-1075.41Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M+MKKVTC VL+ AA +SA MAS EGPAPAPG SS AAAAA PAVG FIGAS+ASFFA  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
TrEMBL top hitse value%identityAlignment
A0A151SMD0 Uncharacterized protein9.0e-0869.49Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+MKKVTC VLI AA++SAA+A++E PAPAPGPSSG A+A  P VG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
A0A5D3DQ83 Arabinogalactan peptide 234.0e-0872.13Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M+MKKVTC VL+ AAAVSA MA+SEGPAPAP  SS  A AA PAVG FIGAS+ SFFA  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
I1L9W6 Uncharacterized protein2.4e-0872.88Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+MKKVTC VLI AA++SAA+A++E PAPAPGPSSGA+AAA  AVG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
V7AHI5 Uncharacterized protein8.1e-0971.19Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+M+KVTC +LI AA+VSA MA++E PAPAPGPSSG A+AAFP VG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
V7AJQ0 Uncharacterized protein2.4e-0869.49Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
        M+M+KVTC +LI AA+VSA +A++E PAPAPGPSSG A+AAFP VG+ +GASV SFFAL
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFAL
SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 231.1e-0554.1Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M MKK+ C VL  AA+++A MA+ E  APAPGP+S AA+AA PA+G+ +GAS+ S F+  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)6.4e-0649.18Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M MKK+ C V+  AA+++A MA+  G APAPGP++  A+ A PA+G+ +GAS+ S FA  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
AT3G57690.1 arabinogalactan protein 237.5e-0754.1Show/hide
Query:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL
        M MKK+ C VL  AA+++A MA+ E  APAPGP+S AA+AA PA+G+ +GAS+ S F+  L
Subjt:  MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGAAGAAGGTTACCTGCACCGTTCTTATTGTCGCCGCTGCTGTTAGTGCCGCTATGGCTTCAAGTGAAGGCCCGGCTCCTGCCCCTGGCCCGTCCTCGGGCGC
TGCTGCTGCCGCCTTCCCGGCTGTTGGCACCTTCATTGGTGCTTCGGTTGCATCCTTCTTTGCCCTATCCTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATAAGATTTCCCTGCTTTTTCTAAGCGGGTCTCTCTTTCTGTGCAGCCCTTTCTTTTTCAATAAATTATTTTCCTTTTCCTACTTATATTATTTTTCCCTCATCACCATG
AACATGAAGAAGGTTACCTGCACCGTTCTTATTGTCGCCGCTGCTGTTAGTGCCGCTATGGCTTCAAGTGAAGGCCCGGCTCCTGCCCCTGGCCCGTCCTCGGGCGCTGC
TGCTGCCGCCTTCCCGGCTGTTGGCACCTTCATTGGTGCTTCGGTTGCATCCTTCTTTGCCCTATCCTTGTAAGAAATTGAGTGAAGAATTATGAAATGAGGAAAGAGAG
ATGTTAGGGAAAATGTGTGTTTATTTTGTTGATTATTCAAT
Protein sequenceShow/hide protein sequence
MNMKKVTCTVLIVAAAVSAAMASSEGPAPAPGPSSGAAAAAFPAVGTFIGASVASFFALSL