CuGenDBv2

Gene ID	Sed0019581
Organism	Sechium edule (Chayote v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	LG08:37134361..37137479
RNA-Seq Expression	Sed0019581
Synteny	Sed0019581
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.8e-43

90.2

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPLIMA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

7.8e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPL+MA+ EQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

3.5e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPLIMA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

7.8e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPL+MA+ EQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

XP_038876969.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]

6.0e-43

92.16

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATN LKS+VAAAVN GVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPL+MA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

3.8e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPL+MA+ EQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

6.5e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLKS++AAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPL+MA+ EQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

4.9e-43

90.2

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLKSI+A AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPL+MA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

3.8e-43

90.2

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPLIMA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

1.7e-43

91.18

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPLIMA+QEQER+SKLEMLKRRGKG PKKGQG+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

3.9e-05

41.11

Show/hide

Query:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAA
        V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   +  +EQ R+S +E  KRRGKGAPKK +   AA
Subjt:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

8.6e-40

77.45

Show/hide

Query:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR
        MA+ SLKS++++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK +DP ++A++E+ERISKLEMLKRR KG PKKG GKRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTACTAATAGCTTGAAGAGTATTGTTGCTGCAGCAGTGAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACCGGTCAACGATC
TACCCACAAGCTTCTGCGCAAAAAACTCATCGGCGACAAAGTAGCTCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTCATCATGGCTCAACAAGAACAAGAGC
GTATTTCCAAGCTTGAAATGCTGAAGCGGCGAGGTAAAGGAGCACCTAAGAAGGGCCAGGGCAAGCGTGCGGCCAAGCGCAATAAGTAG

mRNA sequence

Show/hide mRNA sequence

GAGAAATCAAGAACCAAACCAAATCAACTCCTGTAAAAAGAGTACTAAAAAAAAAAAAAAACTCGTGTAAAAAGAGGTCTTAAGAAAGACGAGTCTGGAATTCTCCGCTC
TGTAGATTGACGATATCAGGCTCTCCACACCAAGCGCTTCCTAATTGGCAGTTTCAGTTTCAGTGTACAGAGGATAAACCCGAACGGAAGAGAGAATGGCTACTAATAGC
TTGAAGAGTATTGTTGCTGCAGCAGTGAATAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACCGGTCAACGATCTACCCACAAGCTTCT
GCGCAAAAAACTCATCGGCGACAAAGTAGCTCAGTGGTATCCATATGACATCAAGAAGGATGATCCTCTCATCATGGCTCAACAAGAACAAGAGCGTATTTCCAAGCTTG
AAATGCTGAAGCGGCGAGGTAAAGGAGCACCTAAGAAGGGCCAGGGCAAGCGTGCGGCCAAGCGCAATAAGTAGAGACATTGACAGTGGAATTATTACTGCTAGGGCTTT
ATCATTTTGTTGTTTTTTCTTTCCTAAGTTTAGGTCATGAACCAGGTTTCTTGTAGGTGTAATGACTTCTATTCATTACTTGAGTACATTTCGTTCATAATTGAGCTCCC
TTGTAGCAAAATAATACTTCAACTGGAACTAATTTAATACGAAGCTCATTATGTTATGTGGAAACTAA

Protein sequence

Show/hide protein sequence

MATNSLKSIVAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLIMAQQEQERISKLEMLKRRGKGAPKKGQGKRAAKRNK

Sed0019581 (gene) of Chayote v1 genome