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Sed0019610 (gene) of Chayote v1 genome

Gene IDSed0019610
OrganismSechium edule (Chayote v1)
DescriptionGTPase IMAP family member 1, putative
Genome locationLG01:17165205..17165672
RNA-Seq ExpressionSed0019610
SyntenySed0019610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652531.1 hypothetical protein Csa_013077, partial [Cucumis sativus]1.6e-1553.33Show/hide
Query:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPY
        +AA+ V +WK MI  FC++SAI IATVS+ I+ + P +F  LS+A LLCF  + F  +  SI +  S+ILYCVGG L  +S FIATAIPY
Subjt:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPY

KAG6572911.1 hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia]8.2e-3658.28Show/hide
Query:  MHWVGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSIC
        M W  +C++   +  W  E   E  GG    S   VA AA+ V +WK MI AFC++SAIAIATVS+QIEKK P+ FNFLSL  LLCF  +AFG +TKSI 
Subjt:  MHWVGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSIC

Query:  QKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMFIAH
        ++ S+ILYCVGG L VT++FIA+AIPY  YFQ+IIFL+YLIFWL+FM +AH
Subjt:  QKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMFIAH

KAG6584385.1 hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia]5.4e-1144.55Show/hide
Query:  AAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLV
        A + + +W+ M+  FC+ +AIAIATVS+QI+ K    F FLS A + CF       L K   Q+ S ILY +GGF  VT+ FIA AIPY  +FQ++   +
Subjt:  AAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLV

Query:  YLIFWLIFMF
        YL+F  I  F
Subjt:  YLIFWLIFMF

KGN60003.2 hypothetical protein Csa_000735, partial [Cucumis sativus]3.6e-0741.35Show/hide
Query:  VGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKA
        +G C   LT A W      +  GG+     VV    A+ V + K MI  FCL+SAI IATVS+Q + K P +F FLS+A L+CF  + F  +  SI +  
Subjt:  VGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKA

Query:  SQIL
        S+IL
Subjt:  SQIL

OMO67964.1 hypothetical protein CCACVL1_20161 [Corchorus capsularis]3.6e-0739.67Show/hide
Query:  EKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKP-PQAFNFLSLAQLLCFSCLAFGNL--TKSICQKASQILYCVGGFLAVTSMFIATAIP
        E+   +    +Q    W+++I AFCL S+I IA +  QI   P P  FN LSLA LL F+CL  G      S   + +++L  VGGF  VT+ FIA AIP
Subjt:  EKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKP-PQAFNFLSLAQLLCFSCLAFGNL--TKSICQKASQILYCVGGFLAVTSMFIATAIP

Query:  YQPYFQMIIFLVYLIFWLIFM
        +  + Q     VY I +L  M
Subjt:  YQPYFQMIIFLVYLIFWLIFM

TrEMBL top hitse value%identityAlignment
A0A0A0LCY2 Uncharacterized protein8.9e-2044.74Show/hide
Query:  VGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKA
        +G C   LT A W      +  GG+     VV    A+ V + K MI  FCL+SAI IATVS+Q + K P +F FLS+A L+CF  + F  +  SI +  
Subjt:  VGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKA

Query:  SQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMF---IAHN
        S+ILYC GGFL  T  FIATAIPY  +F +I+ ++Y IF +IF+    I HN
Subjt:  SQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMF---IAHN

A0A0A0LQB6 Uncharacterized protein1.1e-3053.21Show/hide
Query:  WVGSCMRKLTKACWSWE--PENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIE--KKPPQAFNFLSLAQLLCFSCLAFGNLTKS
        WVGSC+R   KAC  WE     E  G      G  + M A+ V +WK MI A C++SAI IATVS+QIE  K+ P+ F FLS+  LLCF  + F  +TK 
Subjt:  WVGSCMRKLTKACWSWE--PENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIE--KKPPQAFNFLSLAQLLCFSCLAFGNLTKS

Query:  ICQKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMFIA--HN
        I +  S+ILYCVGGFL VT+ FIATAIP+ PYFQ+IIF++YL+F  IFM I   HN
Subjt:  ICQKASQILYCVGGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMFIA--HN

A0A0A0LQP5 Uncharacterized protein9.6e-1441.94Show/hide
Query:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPY-QPYFQMIIF
        + A+TV + K  I   C++SAI I T S+QI+ K P +F  LS+  LLCF  + F  + +S+ +  S+ILYCVG F+  T+ FIATAI Y   +F  I+ 
Subjt:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPY-QPYFQMIIF

Query:  LVYLIF------WLIFMFIAHNVP
        ++Y IF      ++IF+ I HN P
Subjt:  LVYLIF------WLIFMFIAHNVP

A0A0A0LSX4 Uncharacterized protein6.0e-1652.13Show/hide
Query:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPYQPYF
        +AA+ V +WK MI  FC++SAI IATVS+ I+ + P +F  LS+A LLCF  + F  +  SI +  S+ILYCVGG L  +S FIATAIPY   F
Subjt:  MAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCVGGFLAVTSMFIATAIPYQPYF

A0A1R3HC75 Uncharacterized protein1.7e-0739.67Show/hide
Query:  EKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKP-PQAFNFLSLAQLLCFSCLAFGNL--TKSICQKASQILYCVGGFLAVTSMFIATAIP
        E+   +    +Q    W+++I AFCL S+I IA +  QI   P P  FN LSLA LL F+CL  G      S   + +++L  VGGF  VT+ FIA AIP
Subjt:  EKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKP-PQAFNFLSLAQLLCFSCLAFGNL--TKSICQKASQILYCVGGFLAVTSMFIATAIP

Query:  YQPYFQMIIFLVYLIFWLIFM
        +  + Q     VY I +L  M
Subjt:  YQPYFQMIIFLVYLIFWLIFM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGGGTTGGAAGCTGCATGAGAAAGCTAACAAAGGCATGTTGGTCTTGGGAACCAGAGAACGAACCCGAAGGCGGCCTCACGGAAAAATCGGGGGTAGTAGTGGC
GATGGCGGCACAGACGGTGGCGAAATGGAAGAGGATGATTGCAGCATTCTGCTTGACGTCCGCTATAGCCATAGCTACAGTTTCTATTCAAATAGAGAAAAAACCTCCAC
AGGCTTTTAACTTTCTTTCACTTGCTCAGTTGCTGTGTTTTAGTTGTTTGGCTTTTGGAAATCTGACCAAATCTATTTGCCAAAAAGCCTCGCAGATTTTATACTGTGTG
GGTGGTTTCTTGGCTGTGACATCCATGTTCATAGCCACTGCAATTCCATATCAACCATACTTTCAGATGATCATCTTCCTTGTTTACTTGATCTTCTGGTTGATCTTCAT
GTTCATCGCGCATAACGTCCCCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGGGTTGGAAGCTGCATGAGAAAGCTAACAAAGGCATGTTGGTCTTGGGAACCAGAGAACGAACCCGAAGGCGGCCTCACGGAAAAATCGGGGGTAGTAGTGGC
GATGGCGGCACAGACGGTGGCGAAATGGAAGAGGATGATTGCAGCATTCTGCTTGACGTCCGCTATAGCCATAGCTACAGTTTCTATTCAAATAGAGAAAAAACCTCCAC
AGGCTTTTAACTTTCTTTCACTTGCTCAGTTGCTGTGTTTTAGTTGTTTGGCTTTTGGAAATCTGACCAAATCTATTTGCCAAAAAGCCTCGCAGATTTTATACTGTGTG
GGTGGTTTCTTGGCTGTGACATCCATGTTCATAGCCACTGCAATTCCATATCAACCATACTTTCAGATGATCATCTTCCTTGTTTACTTGATCTTCTGGTTGATCTTCAT
GTTCATCGCGCATAACGTCCCCAAATAA
Protein sequenceShow/hide protein sequence
MHWVGSCMRKLTKACWSWEPENEPEGGLTEKSGVVVAMAAQTVAKWKRMIAAFCLTSAIAIATVSIQIEKKPPQAFNFLSLAQLLCFSCLAFGNLTKSICQKASQILYCV
GGFLAVTSMFIATAIPYQPYFQMIIFLVYLIFWLIFMFIAHNVPK