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Sed0019629 (gene) of Chayote v1 genome

Gene IDSed0019629
OrganismSechium edule (Chayote v1)
Descriptionnuclear transport factor 2
Genome locationLG08:6213285..6215246
RNA-Seq ExpressionSed0019629
SyntenySed0019629
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056878.1 nuclear transport factor 2 [Cucumis melo var. makuwa]1.1e-2966.35Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK              T+D QPS  P S+LIFVSGS+E+P++EHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTY
        SQ Y
Subjt:  SQTY

KAG6584071.1 Nuclear transport factor 2B, partial [Cucurbita argyrosperma subsp. sororia]6.2e-3067.29Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++              TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L PT
Subjt:  TYELFPT

XP_008441397.1 PREDICTED: nuclear transport factor 2 [Cucumis melo]2.1e-3064.22Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK              T+D QPS  P S+LIFVSGS+E+P++EHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTYELFPT
        SQ + L P+
Subjt:  SQTYELFPT

XP_022933198.1 nuclear transport factor 2B [Cucurbita moschata]6.2e-3067.29Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++              TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L PT
Subjt:  TYELFPT

XP_023519037.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]5.3e-2965.42Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ DIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++              TVD QPS  P S+LIFVSGSLELP++EH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L PT
Subjt:  TYELFPT

TrEMBL top hitse value%identityAlignment
A0A0A0LUU9 NTF2 domain-containing protein2.2e-2862.62Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ DI+GKAFVEHYYQLFDNERAS+SSLYQPDSM T EGQQILG  DIS+K              T+D QPS    S+LIFVSGS+E+P++EHPLRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L P+
Subjt:  TYELFPT

A0A1S3B3B7 nuclear transport factor 21.0e-3064.22Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK              T+D QPS  P S+LIFVSGS+E+P++EHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTYELFPT
        SQ + L P+
Subjt:  SQTYELFPT

A0A5D3BKX8 Nuclear transport factor 25.1e-3066.35Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        MEE+Q DI+GKAFVEHYY LFDNERAS+SSLYQPDSM T EGQQILG +DISTK              T+D QPS  P S+LIFVSGS+E+P++EHPLR+
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTY
        SQ Y
Subjt:  SQTY

A0A6J1F427 nuclear transport factor 2B3.0e-3067.29Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG DDIS++              TVD QPS  P S+LIFVSGSLELPD+EH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L PT
Subjt:  TYELFPT

A0A6J1KQ62 nuclear transport factor 2B5.7e-2965.42Show/hide
Query:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ
        E++ADIVGKAFVEHYYQLFDNER S+S+LYQPDSM T EGQQILG  DIS++              TVD QPS  P S+LIFVSGSLELP++EH LRFSQ
Subjt:  EDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQ

Query:  TYELFPT
         + L PT
Subjt:  TYELFPT

SwissProt top hitse value%identityAlignment
Q6FRC6 Nuclear transport factor 24.3e-1032Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP
        + + F E YY  FD++R+ + +LY+ +SM T E  Q+ G   I  K              T+D QP+     +L+ ++G L + D+++P RFSQ + L P
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP

Q8NJ52 Nuclear transport factor 23.3e-1034Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP
        + + F E YY+ FD +RA ++ LY+ +SM T E    LG  +I  K              TVD QPS     +L+ VSG+L + ++  P+ ++QT++L P
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFY------------TVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFP

Q9C7F5 Nuclear transport factor 2B1.3e-1744.95Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K              TVD QPS   + +L+FVSG+L+L  +EH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTYELFPT
        SQ + L PT
Subjt:  SQTYELFPT

Q9FZK4 Nuclear transport factor 2A6.9e-1646Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL
        D V KAFVEHYY  FD  R  + SLYQ  SM T EGQ+I G  +I  K              TVD QPS     +L+FVSG+L+L  ++H L+FSQ + L
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL

Q9XJ54 Nuclear transport factor 21.5e-1849.51Show/hide
Query:  ADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYE
        AD V KAFVEHYY+ FD  R ++ SLYQ  SM T EGQQ LG   I+ K              TVD QPS     +L+FVSGSL     EHPL+FSQ ++
Subjt:  ADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYE

Query:  LFP
        L P
Subjt:  LFP

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like2.4e-1950.5Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYE
        V  AFV HYY LFDN+R+S+SSLY P S+ T EGQ I G D+IS K              TVD QPS        +L+FVSGS++L  ++HPLRFSQ Y 
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYE

Query:  L
        L
Subjt:  L

AT1G11570.2 NTF2-like1.1e-2149.11Show/hide
Query:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYE
        V  AFV HYY LFDN+R+S+SSLY P S+ T EGQ I G D+IS K              TVD QPS        +L+FVSGS++L  ++HPLRFSQT+ 
Subjt:  VGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTP---ASLLIFVSGSLELPDKEHPLRFSQTYE

Query:  LFPTLPIGFEVE
        L P L   F V+
Subjt:  LFPTLPIGFEVE

AT1G27310.1 nuclear transport factor 2A4.9e-1746Show/hide
Query:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL
        D V KAFVEHYY  FD  R  + SLYQ  SM T EGQ+I G  +I  K              TVD QPS     +L+FVSG+L+L  ++H L+FSQ + L
Subjt:  DIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYEL

AT1G27970.1 nuclear transport factor 2B9.0e-1944.95Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K              TVD QPS   + +L+FVSG+L+L  +EH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTYELFPT
        SQ + L PT
Subjt:  SQTYELFPT

AT1G27970.2 nuclear transport factor 2B9.0e-1944.95Show/hide
Query:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF
        M +   D V KAFVEHYY  FD  R  ++ LYQ  SM T EGQ+I G   I  K              TVD QPS   + +L+FVSG+L+L  +EH L+F
Subjt:  MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTK------------FYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRF

Query:  SQTYELFPT
        SQ + L PT
Subjt:  SQTYELFPT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCAT
GTTCACTTTGGAAGGCCAGCAAATATTAGGCGGTGATGACATCTCAACTAAGTTTTACACCGTTGATGTGCAACCCTCCGTCACCCCTGCCTCCCTCCTCATCTTCGTCA
GCGGTAGCCTTGAGCTACCCGACAAAGAACACCCCTTGAGATTCAGTCAGACATATGAGTTATTCCCCACATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGATCAGGCTGATATTGTAGGGAAGGCGTTTGTGGAACATTACTACCAATTGTTCGACAACGAAAGAGCCTCTGTTTCTTCTTTGTACCAACCCGACTCCAT
GTTCACTTTGGAAGGCCAGCAAATATTAGGCGGTGATGACATCTCAACTAAGTTTTACACCGTTGATGTGCAACCCTCCGTCACCCCTGCCTCCCTCCTCATCTTCGTCA
GCGGTAGCCTTGAGCTACCCGACAAAGAACACCCCTTGAGATTCAGTCAGACATATGAGTTATTCCCCACATTGCCAATTGGTTTTGAGGTGGAACCCCATATTCTCTAA
Protein sequenceShow/hide protein sequence
MEEDQADIVGKAFVEHYYQLFDNERASVSSLYQPDSMFTLEGQQILGGDDISTKFYTVDVQPSVTPASLLIFVSGSLELPDKEHPLRFSQTYELFPTLPIGFEVEPHIL