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Sed0019640 (gene) of Chayote v1 genome

Gene IDSed0019640
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:8185274..8196569
RNA-Seq ExpressionSed0019640
SyntenySed0019640
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_017251469.1 PREDICTED: uncharacterized protein LOC108222085 [Daucus carota subsp. sativus]1.4e-1031.82Show/hide
Query:  QNQLWSRRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKE--VFVESDSKKL
        Q Q  SR  ++D+ +W PP  GA K +++ + R    + G G++L++H G+         +     F  EA+ + + L  + ++ L++  V+VESDS+  
Subjt:  QNQLWSRRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKE--VFVESDSKKL

Query:  VEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNA
        V AI NE +     GV++      L+ +    +SFI RN+N VAH LA++ C A
Subjt:  VEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNA

XP_030499807.1 uncharacterized protein LOC115715132 [Cannabis sativa]5.2e-1027.61Show/hide
Query:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL
        W+ P +   K ++++A   + ++ G G++++DH G    + A      F +  TEA+ + + L  +       V +ESDS   V+AI +  L+ S  G++
Subjt:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL

Query:  LNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWA
        +N+ R +L ++    + F+ R++NC AH +A+ A
Subjt:  LNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWA

XP_030940021.1 uncharacterized protein LOC115964936 [Quercus lobata]1.2e-0932.39Show/hide
Query:  KWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGV
        KW  P  G FK +++ A   +   +  GVI++D +G      + +    F    TEALAL +G+ L +E  L +V  E D+  +++A VNE  + S  G 
Subjt:  KWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGV

Query:  LLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNAGLSK
        ++  IR L  +  +     ++RN N VAH LA+ A  +G+S+
Subjt:  LLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNAGLSK

XP_034217419.1 uncharacterized protein LOC117628994 [Prunus dulcis]6.8e-1032.45Show/hide
Query:  RNG--WN--EMNQNYNGLHGSL-----FNYQNQLWSRRRDVDADK-WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFAT
        RNG  WN  +    +  LH SL         N L S+ R     + W PP   + K +++ A +P  +  G GV+++D  G      A  F   F A   
Subjt:  RNG--WN--EMNQNYNGLHGSL-----FNYQNQLWSRRRDVDADK-WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFAT

Query:  EALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNAGLSKF
        EALA   G  LV E+  + V  ESD+ ++V A+ N S+  S  G ++ + + LL  I   G + I R +N VAH LA++A + G S +
Subjt:  EALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNAGLSKF

XP_042982410.1 uncharacterized protein LOC122311798 [Carya illinoinensis]5.5e-1231.82Show/hide
Query:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL
        W PP   ++K + ++    E    G G++++++RG    V  +       A++ E  ALI+ +KL  E RL++V +E D+K ++E ++ +S  +S  G+L
Subjt:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL

Query:  LNEIRGLLKNICFFGISFIHRNSNCVAHLLAQ
        + +I+ LLK +  + +SF+ R SN VAH+ A+
Subjt:  LNEIRGLLKNICFFGISFIHRNSNCVAHLLAQ

TrEMBL top hitse value%identityAlignment
A0A5J9WD96 CCHC-type domain-containing protein (Fragment)5.6e-1033.33Show/hide
Query:  RRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNES
        R +  +A +WIPPR G  K +++ A  P   T G GVI++D RGL   +         D    EALA + G++L      + + +ESDS  LV  + +  
Subjt:  RRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNES

Query:  LLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWAC
        L  S+   L+ +I+   + +    +  I R  N VAH LAQ AC
Subjt:  LLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWAC

A0A6P9EME2 uncharacterized protein LOC1183481739.5e-1032.61Show/hide
Query:  KWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRG--LGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSH
        KW PP  G+ K ++++A  P +   G G +L+D +G  L  F  A +   G ++   E LA+ +G++      +  + VESDS   ++A+ ++S+ NS  
Subjt:  KWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRG--LGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSH

Query:  GVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWAC
        GV+  EI+ L         S ++R  N VAH LA+ AC
Subjt:  GVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWAC

A0A7J9D3I9 RNase H domain-containing protein1.6e-0933.33Show/hide
Query:  ADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSH
        + KW+PP   A K + ++A       +  GV+++++ GL       L+    DAFATEALA +  +    +K  ++V VE DS+ +   +    L  S+ 
Subjt:  ADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSH

Query:  GVLLNEIRGLLKNICFFGISFIH--RNSNCVAHLLAQWACNAGLSKF
        GV + EIR +  N  F  ISF H  R SN VAH +A      G S++
Subjt:  GVLLNEIRGLLKNICFFGISFIH--RNSNCVAHLLAQWACNAGLSKF

A0A7N2MEF4 RNase H domain-containing protein9.5e-1035.29Show/hide
Query:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL
        WIPP  G FK + + A   E    G GV++++ RG      +   E+  D    EA AL +G+ L  +  LKE+ +ESDS+ +V+A+ ++ LL  S   +
Subjt:  WIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVL

Query:  LNEIRGLLKNICFFGISFIH--RNSNCVAHLLAQWA
        +  I   LK  CF   S  H  R+ N  AH+LA+ A
Subjt:  LNEIRGLLKNICFFGISFIH--RNSNCVAHLLAQWA

A0A803PCK4 Uncharacterized protein1.6e-0930Show/hide
Query:  DVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDA--SLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESL
        D  A+ W PP     K ++++A  P+ +T G G++ ++H  LG F++A  S     + A   EAL + + L  +  K  +   +E+DS   V+AI +   
Subjt:  DVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDA--SLFEVGFDAFATEALALIQGLKLVTEKRLKEVFVESDSKKLVEAIVNESL

Query:  LNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQ
        ++S+ G+++ E R LL  +    + F+ R++N VAH +A+
Subjt:  LNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein6.3e-0624.4Show/hide
Query:  IRNGWNEMNQNYNGLHGSLFNYQNQLWSRRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGL
        I++    +N N    + ++    N + + RR  D+ +W PP  G  K + +S        T  G  +++  G       +  +    +   EAL  +  L
Subjt:  IRNGWNEMNQNYNGLHGSLFNYQNQLWSRRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQGL

Query:  KLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLA
        +++    L+ V+ ESDSK LV  ++N    +S  G L+ +IR  +  + +  + F++R  N  A  LA
Subjt:  KLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTCTTGCTGCTGCTTTATCTTTGAGAAGAAGCAGGATGTTGAACACCACGAGACAAAGGAGGTTGTTCGAAGAAGATCACAGGTGGAGGATGGTCGTAGAGGT
TTTGGAGAGGAGAAGTTGCAGAGTAGCTAGAGAAGATGAAGATGAGAGCAGATGTGGGAAAGGAAGAAGACGAAGGAAGAGAATAAGGAGAATCGGGTATAACCCCTTTG
TGCAGAAAAAGAAAAAAGAAAAAATAAAGAATGAAGAAGAAGATGAAGAAGAAAAAGAAGAGGATGGAGAAAAAGGAGCAATCGTCAACGATGAGCTCCCCCCGACACTG
GAATTTTGGATTGAGGATGCGGATTGTGCAGATCTAATACGAAATGGTTGGAATGAGATGAACCAGAATTATAATGGCCTTCATGGATCACTATTTAACTATCAAAATCA
ATTGTGGAGTAGGAGGCGTGATGTTGATGCAGATAAGTGGATTCCACCGAGAATAGGTGCATTTAAATTCTCTATTAACTCAGCTTGCCGACCAGAATTCAGCACAACAG
GCTGTGGTGTAATCCTTCAAGATCATCGAGGTCTTGGAGGTTTTGTGGATGCATCCCTCTTTGAAGTAGGTTTCGATGCCTTTGCTACTGAAGCTTTGGCATTAATCCAA
GGGCTTAAGCTTGTTACGGAGAAACGGTTGAAGGAGGTGTTTGTTGAATCAGACTCGAAAAAGCTAGTGGAGGCAATTGTAAATGAATCCTTGCTCAATTCTAGTCATGG
CGTTCTACTGAATGAAATTAGGGGTTTGTTAAAAAATATTTGCTTTTTTGGTATCTCTTTTATTCACAGAAATTCAAATTGTGTAGCTCACCTCTTAGCTCAATGGGCTT
GTAATGCTGGTTTGTCAAAGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTCTTGCTGCTGCTTTATCTTTGAGAAGAAGCAGGATGTTGAACACCACGAGACAAAGGAGGTTGTTCGAAGAAGATCACAGGTGGAGGATGGTCGTAGAGGT
TTTGGAGAGGAGAAGTTGCAGAGTAGCTAGAGAAGATGAAGATGAGAGCAGATGTGGGAAAGGAAGAAGACGAAGGAAGAGAATAAGGAGAATCGGGTATAACCCCTTTG
TGCAGAAAAAGAAAAAAGAAAAAATAAAGAATGAAGAAGAAGATGAAGAAGAAAAAGAAGAGGATGGAGAAAAAGGAGCAATCGTCAACGATGAGCTCCCCCCGACACTG
GAATTTTGGATTGAGGATGCGGATTGTGCAGATCTAATACGAAATGGTTGGAATGAGATGAACCAGAATTATAATGGCCTTCATGGATCACTATTTAACTATCAAAATCA
ATTGTGGAGTAGGAGGCGTGATGTTGATGCAGATAAGTGGATTCCACCGAGAATAGGTGCATTTAAATTCTCTATTAACTCAGCTTGCCGACCAGAATTCAGCACAACAG
GCTGTGGTGTAATCCTTCAAGATCATCGAGGTCTTGGAGGTTTTGTGGATGCATCCCTCTTTGAAGTAGGTTTCGATGCCTTTGCTACTGAAGCTTTGGCATTAATCCAA
GGGCTTAAGCTTGTTACGGAGAAACGGTTGAAGGAGGTGTTTGTTGAATCAGACTCGAAAAAGCTAGTGGAGGCAATTGTAAATGAATCCTTGCTCAATTCTAGTCATGG
CGTTCTACTGAATGAAATTAGGGGTTTGTTAAAAAATATTTGCTTTTTTGGTATCTCTTTTATTCACAGAAATTCAAATTGTGTAGCTCACCTCTTAGCTCAATGGGCTT
GTAATGCTGGTTTGTCAAAGTTTTAG
Protein sequenceShow/hide protein sequence
MKSLAAALSLRRSRMLNTTRQRRLFEEDHRWRMVVEVLERRSCRVAREDEDESRCGKGRRRRKRIRRIGYNPFVQKKKKEKIKNEEEDEEEKEEDGEKGAIVNDELPPTL
EFWIEDADCADLIRNGWNEMNQNYNGLHGSLFNYQNQLWSRRRDVDADKWIPPRIGAFKFSINSACRPEFSTTGCGVILQDHRGLGGFVDASLFEVGFDAFATEALALIQ
GLKLVTEKRLKEVFVESDSKKLVEAIVNESLLNSSHGVLLNEIRGLLKNICFFGISFIHRNSNCVAHLLAQWACNAGLSKF