CuGenDBv2

Gene ID	Sed0019645
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S21
Genome location	LG02:48847916..48850874
RNA-Seq Expression	Sed0019645
Synteny	Sed0019645
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0006470 - protein dephosphorylation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004722 - protein serine/threonine phosphatase activity (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR018279 - Ribosomal protein S21e, conserved site IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

6.0e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]

1.3e-37

96.3

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

1.7e-37

95.06

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

2.7e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVE+HQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]

6.0e-38

96.3

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVE+HQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7W3 40S ribosomal protein S21

2.9e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

A0A1S4DSM1 40S ribosomal protein S21

2.9e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

A0A5D3CXC9 40S ribosomal protein S21

2.9e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVE+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

A0A6J1GFE6 40S ribosomal protein S21

1.3e-38

97.53

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVE+HQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

A0A6J1IJN4 40S ribosomal protein S21

2.9e-38

96.3

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQGDADSALDRLW KKKVE+HQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

3.2e-34

79.01

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQGDADSALDRLWQK+K E+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Q3E902 40S ribosomal protein S21-2

3.1e-37

86.42

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Q41852 40S ribosomal protein S21

5.5e-34

80.25

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS+LDRLWQKKK EI Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Q9M337 40S ribosomal protein S21-1

1.3e-35

81.48

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Q9SMI2 40S ribosomal protein S21

2.1e-25

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

9.3e-37

81.48

Show/hide

Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

AT3G53890.2 Ribosomal protein S21e

9.3e-37

81.48

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

AT5G27700.1 Ribosomal protein S21e

2.2e-38

86.42

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Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Sequences

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CDS sequence

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ATGCAGAACGAAGAGGGAAAAATCACAGAGCTCTACATTCCCAGAAAATGCTCTGCCACGAATCGGCTGATTACTTCCAAGGACCATGCCTCTGTTCAGATCAACATTGG
GCATTTGGATGAGAATGGTATCTACACGGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGCACTGGATCGGCTCTGGCAGA
AGAAAAAAGTTGAAATTCATCAATAA

mRNA sequence

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AAAAAAAAACTAGGGCTTCTTTAAAATTAGGGTTTGTTCAACGCGATTGTCTCTTCGTCTCGGATAGCTCGTTTCCTCTGGTAAGCTGTGGTTCTCTAATTCGGAAGAAT
TATTCGATACAATCACCAAGATGCAGAACGAAGAGGGAAAAATCACAGAGCTCTACATTCCCAGAAAATGCTCTGCCACGAATCGGCTGATTACTTCCAAGGACCATGCC
TCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGTATCTACACGGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGC
ACTGGATCGGCTCTGGCAGAAGAAAAAAGTTGAAATTCATCAATAATAGATGAATCTGCTGTTCTGTTTCATCTCTATATCAAAGTTTTCAAGGATAGAGATTCACTTTT
ATATAGTTTTGAGAACCTATCATACTTTAAGTAGTTTCTTTTGACATTTTAAACTTTTCTTGAATTGCAAACTCAACAACACCTGAGCCATGTTTTGATAGGTAAAAAGA
ACAAAACTAAGGTGGTGAATGAAATTTGTTAAAATGATTTTCCATTTA

Protein sequence

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MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEIHQ

Sed0019645 (gene) of Chayote v1 genome