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Sed0019672 (gene) of Chayote v1 genome

Gene IDSed0019672
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL14-like
Genome locationLG13:19332941..19333706
RNA-Seq ExpressionSed0019672
SyntenySed0019672
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]1.4e-1540.43Show/hide
Query:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC
        G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+             EE  S   T A+ ++K  E G     C+IC
Subjt:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC

Query:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV
         E F +EEIC V+E+CGH FH DC+D+W RIE  CPLCRC+
Subjt:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV

TYJ97407.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]7.0e-1539.72Show/hide
Query:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC
        G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+             EE  S     A+ ++K  E G     C+IC
Subjt:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC

Query:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV
         E F +EEIC V+E+CGH FH DC+D+W RIE  CPLCRC+
Subjt:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV

XP_022158249.1 E3 ubiquitin-protein ligase RING1-like [Momordica charantia]4.5e-1436.47Show/hide
Query:  MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTR--------SDDVES------------SHVRRVQPEIAR
        MS  P P P  S   + P T V  +      +I    G   V  IC  LI+  FI + Y  R         DD+ES            S   R QP    
Subjt:  MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTR--------SDDVES------------SHVRRVQPEIAR

Query:  RWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC
        +   E   +  A     EI   +  DC+IC E F E+++CRVIE CGHFFH DC+D+W  +ER CPLCRC
Subjt:  RWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC

XP_022158253.1 RING-H2 finger protein ATL14-like [Momordica charantia]1.6e-2751.47Show/hide
Query:  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVF
        PP T  A+ RN+FHLT R+ +A G M VAV+CA  I  +F+FH+YKTR  D ES    R QP+ A +  A       +  A+ E      G C+IC E F
Subjt:  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVF

Query:  GEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC
         EEE C VIENCGHFFH DC+DRW +IE  CPLCRC
Subjt:  GEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC

XP_031742489.1 RING-H2 finger protein ATL1-like [Cucumis sativus]2.3e-3454.09Show/hide
Query:  SSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHW-YKTR----SDDVESSHVRRVQPEIARRWAAEEGGSGTATAAF
        S  P P+PES+T    P   +  + FHLTTR+TIA GLMLVAVICA++I+F+FIFH+ Y  R      D+ESS V     E        E    +    F
Subjt:  SSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHW-YKTR----SDDVESSHVRRVQPEIARRWAAEEGGSGTATAAF

Query:  GEIKTGEVGD-----CSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC
         EIKTGE+GD     C+IC E FGEEEIC VIENCGHFFH DC++RW RIER CPLCRC
Subjt:  GEIKTGEVGD-----CSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC

TrEMBL top hitse value%identityAlignment
A0A5A7VMH1 RING-H2 finger protein ATL52-like6.8e-1640.43Show/hide
Query:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC
        G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+             EE  S   T A+ ++K  E G     C+IC
Subjt:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC

Query:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV
         E F +EEIC V+E+CGH FH DC+D+W RIE  CPLCRC+
Subjt:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV

A0A5D3BE50 RING-type E3 ubiquitin transferase3.4e-1539.72Show/hide
Query:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC
        G + V+V+C +LI+FLF  + Y+     TR+ D+E   H  R        Q EI R+             EE  S     A+ ++K  E G     C+IC
Subjt:  GLMLVAVICAVLIMFLFIFHWYK-----TRSDDVESS-HVRR-------VQPEIARR----------WAAEEGGSGTATAAFGEIKTGEVGD----CSIC

Query:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV
         E F +EEIC V+E+CGH FH DC+D+W RIE  CPLCRC+
Subjt:  TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV

A0A6J1DVK4 RING-H2 finger protein ATL14-like7.8e-2851.47Show/hide
Query:  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVF
        PP T  A+ RN+FHLT R+ +A G M VAV+CA  I  +F+FH+YKTR  D ES    R QP+ A +  A       +  A+ E      G C+IC E F
Subjt:  PPDT--AVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVF

Query:  GEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC
         EEE C VIENCGHFFH DC+DRW +IE  CPLCRC
Subjt:  GEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC

A0A6J1DYV0 E3 ubiquitin-protein ligase RING1-like2.2e-1436.47Show/hide
Query:  MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTR--------SDDVES------------SHVRRVQPEIAR
        MS  P P P  S   + P T V  +      +I    G   V  IC  LI+  FI + Y  R         DD+ES            S   R QP    
Subjt:  MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTR--------SDDVES------------SHVRRVQPEIAR

Query:  RWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC
        +   E   +  A     EI   +  DC+IC E F E+++CRVIE CGHFFH DC+D+W  +ER CPLCRC
Subjt:  RWAAEEGGSGTATAAFGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRC

A0A6J1HJU0 RING-type E3 ubiquitin transferase2.7e-1235.92Show/hide
Query:  GLMLVAVICAVLIMFLFIFH-------WYKTRSDDVE-SSHVRRV----------------QPEIARRWAAEEGGSGTATAAFGEIKTGEVGD----CSI
        GL++++ I  ++ + +F+F         Y+TR+ DVE ++H  R+                 P      A EE  S     A+ +IKT E  D    C+I
Subjt:  GLMLVAVICAVLIMFLFIFH-------WYKTRSDDVE-SSHVRRV----------------QPEIARRWAAEEGGSGTATAAFGEIKTGEVGD----CSI

Query:  CTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV
        C E F EEEIC V++ CGH FH  C+D+W RI   CPLCRC+
Subjt:  CTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCV

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL641.7e-0829.08Show/hide
Query:  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEI-----------KTGEVGDCSICTEVFG
        H ++   + G +ML +VI   V ++ +  FH Y        +  +RR      R  +A         A   +I              E  +CS+C   F 
Subjt:  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEI-----------KTGEVGDCSICTEVFG

Query:  EEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDF
        EE+  R++  CGH FH DC+D WFR    CPLCR      F
Subjt:  EEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDF

Q84W40 RING-H2 finger protein ATL111.9e-0739.34Show/hide
Query:  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR
        T  +  +KT  +G    +CS+C   F ++E  R+I  C H FH  C+D W R    CPLCR
Subjt:  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR

Q8L9T5 RING-H2 finger protein ATL27.8e-0927.06Show/hide
Query:  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDDVESSHVRRVQPEIARR-----WAAEEGGSGTATAA-----
        +S  Q+P     + N+F  +    ++G +ML A++    ++ L +F      WY  R+      H+RR      RR     + A+   + T+  A     
Subjt:  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDDVESSHVRRVQPEIARR-----WAAEEGGSGTATAA-----

Query:  -----------FGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS
                   F +    +  +C++C   F E E  RV+ NC H FH DC+D WF     CPLCR +  S
Subjt:  -----------FGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS

Q9LSW9 RING-H2 finger protein ATL161.7e-0848Show/hide
Query:  DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD
        +CS+C   F +EE  R+I NC H FH DC+D W +    CPLCR   S D
Subjt:  DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD

Q9LZJ6 RING-H2 finger protein ATL57.0e-1030.28Show/hide
Query:  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAA--------------FGEIKTGE--VGDC
        N  H ++R ++ G +ML +VI   V ++ +  FH Y       ++  +RR      R  AA    + ++++                  +KT E  + +C
Subjt:  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAA--------------FGEIKTGE--VGDC

Query:  SICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR
        S+C   F E++  RV+  CGH FH DC+D WFR    CPLCR
Subjt:  SICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR

Arabidopsis top hitse value%identityAlignment
AT1G72200.1 RING/U-box superfamily protein1.4e-0839.34Show/hide
Query:  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR
        T  +  +KT  +G    +CS+C   F ++E  R+I  C H FH  C+D W R    CPLCR
Subjt:  TAAFGEIKTGEVG----DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR

AT2G47560.1 RING/U-box superfamily protein1.2e-0929.08Show/hide
Query:  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEI-----------KTGEVGDCSICTEVFG
        H ++   + G +ML +VI   V ++ +  FH Y        +  +RR      R  +A         A   +I              E  +CS+C   F 
Subjt:  HLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEI-----------KTGEVGDCSICTEVFG

Query:  EEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDF
        EE+  R++  CGH FH DC+D WFR    CPLCR      F
Subjt:  EEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDF

AT3G16720.1 TOXICOS EN LEVADURA 25.5e-1027.06Show/hide
Query:  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDDVESSHVRRVQPEIARR-----WAAEEGGSGTATAA-----
        +S  Q+P     + N+F  +    ++G +ML A++    ++ L +F      WY  R+      H+RR      RR     + A+   + T+  A     
Subjt:  SSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIF-----HWYKTRSDDVESSHVRRVQPEIARR-----WAAEEGGSGTATAA-----

Query:  -----------FGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS
                   F +    +  +C++C   F E E  RV+ NC H FH DC+D WF     CPLCR +  S
Subjt:  -----------FGEIKTGEVGDCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSS

AT3G62690.1 AtL55.0e-1130.28Show/hide
Query:  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAA--------------FGEIKTGE--VGDC
        N  H ++R ++ G +ML +VI   V ++ +  FH Y       ++  +RR      R  AA    + ++++                  +KT E  + +C
Subjt:  NSFHLTTRITIAGGLMLVAVICA-VLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAA--------------FGEIKTGE--VGDC

Query:  SICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR
        S+C   F E++  RV+  CGH FH DC+D WFR    CPLCR
Subjt:  SICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCR

AT5G43420.1 RING/U-box superfamily protein1.2e-0948Show/hide
Query:  DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD
        +CS+C   F +EE  R+I NC H FH DC+D W +    CPLCR   S D
Subjt:  DCSICTEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATCTTTTCCAATTCCCCTGCCGGAATCTTCAACACTGCAAAATCCGCCGGACACGGCGGTTGATCGGAATAGCTTCCACTTAACGACGAGAATAACTATCGCCGG
CGGATTGATGCTGGTGGCGGTGATTTGTGCCGTACTGATTATGTTTCTGTTCATATTTCATTGGTACAAAACAAGAAGCGATGACGTGGAATCGAGCCATGTCCGGCGAG
TTCAGCCGGAAATCGCACGGCGGTGGGCGGCGGAGGAAGGTGGCTCGGGCACCGCGACGGCGGCGTTTGGGGAAATTAAAACAGGGGAAGTTGGGGATTGTTCGATTTGT
ACGGAGGTGTTTGGGGAGGAAGAGATTTGTAGAGTGATTGAGAATTGCGGTCACTTTTTTCATACGGACTGTTTGGATCGGTGGTTTAGAATTGAGAGATGTTGCCCATT
GTGTCGATGTGTTTGTTCATCGGATTTTGATGGTTTCAAAATTAAGCTTCAATGCCAAAACGAGCATAGTTCAATTGAGGTCTTGTACTGA
mRNA sequenceShow/hide mRNA sequence
AAACCCCCAAAATTTGAAATTCCGTTGAATTTCAGCTTTCATTCAACTCAACCATGTCATCTTTTCCAATTCCCCTGCCGGAATCTTCAACACTGCAAAATCCGCCGGAC
ACGGCGGTTGATCGGAATAGCTTCCACTTAACGACGAGAATAACTATCGCCGGCGGATTGATGCTGGTGGCGGTGATTTGTGCCGTACTGATTATGTTTCTGTTCATATT
TCATTGGTACAAAACAAGAAGCGATGACGTGGAATCGAGCCATGTCCGGCGAGTTCAGCCGGAAATCGCACGGCGGTGGGCGGCGGAGGAAGGTGGCTCGGGCACCGCGA
CGGCGGCGTTTGGGGAAATTAAAACAGGGGAAGTTGGGGATTGTTCGATTTGTACGGAGGTGTTTGGGGAGGAAGAGATTTGTAGAGTGATTGAGAATTGCGGTCACTTT
TTTCATACGGACTGTTTGGATCGGTGGTTTAGAATTGAGAGATGTTGCCCATTGTGTCGATGTGTTTGTTCATCGGATTTTGATGGTTTCAAAATTAAGCTTCAATGCCA
AAACGAGCATAGTTCAATTGAGGTCTTGTACTGACACGATCGAAGTTAGAGGTTCGATTCTTTCGCTCCAGGTATTAAAAGAAAAATAAAACCAAGCTTTCATTTTCTTT
GTGTTAAAAGCATAAATTCAACCTATCTATCTCTTTAAATTTGGTTTTGTTCCATTATTTAATAAGTTTGTCTATTAAGTTGACATACATGATTAGAATAAATTTG
Protein sequenceShow/hide protein sequence
MSSFPIPLPESSTLQNPPDTAVDRNSFHLTTRITIAGGLMLVAVICAVLIMFLFIFHWYKTRSDDVESSHVRRVQPEIARRWAAEEGGSGTATAAFGEIKTGEVGDCSIC
TEVFGEEEICRVIENCGHFFHTDCLDRWFRIERCCPLCRCVCSSDFDGFKIKLQCQNEHSSIEVLY