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Sed0019676 (gene) of Chayote v1 genome

Gene IDSed0019676
OrganismSechium edule (Chayote v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationLG08:3478962..3483715
RNA-Seq ExpressionSed0019676
SyntenySed0019676
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452842.1 hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis]1.3e-2977.55Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYV
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LG              S +RQ+  +DE+V
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYV

KAG2404782.1 CBL-interacting serine/threonine-protein [Vigna angularis]2.2e-2997.18Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

THU44387.1 hypothetical protein C4D60_Mb02t06860 [Musa balbisiana]1.3e-2968.75Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNL
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+NVKKK++K L   F      C   +   RQ+ ++DEYV +
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNL

Query:  REFSFPLYGELA
         ++  PL   LA
Subjt:  REFSFPLYGELA

XP_003597961.1 small nuclear ribonucleoprotein E [Medicago truncatula]1.7e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

XP_022135003.1 small nuclear ribonucleoprotein E-like [Momordica charantia]1.7e-2998.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

TrEMBL top hitse value%identityAlignment
A0A4S8I8U0 Small nuclear ribonucleoprotein E6.2e-3068.75Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNL
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+NVKKK++K L   F      C   +   RQ+ ++DEYV +
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNL

Query:  REFSFPLYGELA
         ++  PL   LA
Subjt:  REFSFPLYGELA

A0A6J1C3K6 Small nuclear ribonucleoprotein E8.1e-3098.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A0A6J1EQZ2 Small nuclear ribonucleoprotein E8.1e-3098.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A0A6J1I7N4 Small nuclear ribonucleoprotein E8.1e-3098.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

G7IMA2 Small nuclear ribonucleoprotein E8.1e-3098.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E7.9e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

A4FUI2 Small nuclear ribonucleoprotein E7.9e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62303 Small nuclear ribonucleoprotein E7.9e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62304 Small nuclear ribonucleoprotein E7.9e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

P62305 Small nuclear ribonucleoprotein E7.9e-2271.64Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein6.2e-3088.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

AT2G18740.2 Small nuclear ribonucleoprotein family protein6.2e-3088.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.6e-3090.14Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACGAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
CAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGCAAAAAGACACTCGGTATACCTT
TTTCTCCCCTAATTTCTTGTTGCCTTCTCTCTAATTCATTGAAGAGACAATATTACGTTAATGATGAATACGTAAATTTGAGAGAGTTTTCATTTCCTTTGTATGGCGAA
CTAGCTTCTGGAATCGCATCCCTCAGGTCATGTAACCCTTTACTCTCTCTGCTTTCAACTATAGTATCCCTCCGATTCTTTGGGAAGCTTGGCTTTAACTTATACCCTTG
CCCATGTGAGTTTAGTGTATGCTTTCAGAAAAATGGGGTCTCAAATAATACACTAGCACCTAGAAAAGATAAATGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACGAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
CAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGCAAAAAGACACTCGGTATACCTT
TTTCTCCCCTAATTTCTTGTTGCCTTCTCTCTAATTCATTGAAGAGACAATATTACGTTAATGATGAATACGTAAATTTGAGAGAGTTTTCATTTCCTTTGTATGGCGAA
CTAGCTTCTGGAATCGCATCCCTCAGGTCATGTAACCCTTTACTCTCTCTGCTTTCAACTATAGTATCCCTCCGATTCTTTGGGAAGCTTGGCTTTAACTTATACCCTTG
CCCATGTGAGTTTAGTGTATGCTTTCAGAAAAATGGGGTCTCAAATAATACACTAGCACCTAGAAAAGATAAATGCCCCTAA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNLREFSFPLYGE
LASGIASLRSCNPLLSLLSTIVSLRFFGKLGFNLYPCPCEFSVCFQKNGVSNNTLAPRKDKCP