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Sed0019677 (gene) of Chayote v1 genome

Gene IDSed0019677
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
Genome locationLG11:12529735..12530448
RNA-Seq ExpressionSed0019677
SyntenySed0019677
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2670825.1 hypothetical protein I3760_14G105300 [Carya illinoinensis]1.5e-0747.01Show/hide
Query:  MAAS-AALRSSSLRAICRI----SIGCATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA
        MAAS AA RS+ +RA+CR     S   AT+   +    S+FV  RT  SPH         HSS                   RL+RRELSSL PIHSAIA
Subjt:  MAAS-AALRSSSLRAICRI----SIGCATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA

Query:  SACLVSELPAEASSSIE
        SACLVS+LP+EAS+S E
Subjt:  SACLVSELPAEASSSIE

XP_018848639.1 uncharacterized protein LOC109011774 [Juglans regia]1.2e-0745.24Show/hide
Query:  MAASAAL-RSSSLRAICRIS-IGC---ATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA
        MAAS A+ RS+ +RA+CR S I C   AT+   +    S+FV  RT  SPH         H S                   RL+RRELSSL PIHSAIA
Subjt:  MAASAAL-RSSSLRAICRIS-IGC---ATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA

Query:  SACLVSELPAEASSSIEVFLITMLLP
        SACLVS+LP+EAS+S E   ++ L P
Subjt:  SACLVSELPAEASSSIEVFLITMLLP

XP_022152888.1 uncharacterized protein LOC111020511 [Momordica charantia]1.5e-1554.84Show/hide
Query:  AASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA
        +AS ALRSS LRAICRIS   A +NV VS    S RSSFV  RTSISP          HS                   +RLLRRELSSLRP+HSAIASA
Subjt:  AASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA

Query:  CLVSELPAEASSSIEVFLITMLLP
        CLVSELPAEAS+S+E   +  L P
Subjt:  CLVSELPAEASSSIEVFLITMLLP

XP_022937479.1 uncharacterized protein LOC111443881 [Cucurbita moschata]1.4e-1656Show/hide
Query:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS
        MAAS ALRSS LRAI RIS G A +NV VS    S RSSFVS R SISPH L                             RLLRRELSSLRPIHSAIAS
Subjt:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS

Query:  ACLVSELPAEASSSIEVFLITMLLP
        ACLVSELPAEAS+S++   +  L P
Subjt:  ACLVSELPAEASSSIEVFLITMLLP

XP_022969556.1 uncharacterized protein LOC111468540 [Cucurbita maxima]1.5e-1554.4Show/hide
Query:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS
        MAAS ALRSS LRAI RIS   + +NV VS    S RSSFVS R SISPH L                             RLLRRELSSLRPIHSAIAS
Subjt:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS

Query:  ACLVSELPAEASSSIEVFLITMLLP
        ACLVSELPAEAS+S++   +  L P
Subjt:  ACLVSELPAEASSSIEVFLITMLLP

TrEMBL top hitse value%identityAlignment
A0A2I4GXL8 uncharacterized protein LOC1090117745.6e-0845.24Show/hide
Query:  MAASAAL-RSSSLRAICRIS-IGC---ATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA
        MAAS A+ RS+ +RA+CR S I C   AT+   +    S+FV  RT  SPH         H S                   RL+RRELSSL PIHSAIA
Subjt:  MAASAAL-RSSSLRAICRIS-IGC---ATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIA

Query:  SACLVSELPAEASSSIEVFLITMLLP
        SACLVS+LP+EAS+S E   ++ L P
Subjt:  SACLVSELPAEASSSIEVFLITMLLP

A0A2N9FKA7 Uncharacterized protein1.6e-0745.69Show/hide
Query:  MAASAALRSSSLRAICRISI--GCATKNVPVSSFRSSFVSPRTSI-SPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA
        MAAS A RS  +RA+CR S     AT+   + S  S+FV  R+ I SP PL                             RLLRRELSSL+P+HS IASA
Subjt:  MAASAALRSSSLRAICRISI--GCATKNVPVSSFRSSFVSPRTSI-SPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA

Query:  CLVSELPAEASSSIEV
        CLVS+LP+EAS+S EV
Subjt:  CLVSELPAEASSSIEV

A0A6J1DG34 uncharacterized protein LOC1110205117.3e-1654.84Show/hide
Query:  AASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA
        +AS ALRSS LRAICRIS   A +NV VS    S RSSFV  RTSISP          HS                   +RLLRRELSSLRP+HSAIASA
Subjt:  AASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASA

Query:  CLVSELPAEASSSIEVFLITMLLP
        CLVSELPAEAS+S+E   +  L P
Subjt:  CLVSELPAEASSSIEVFLITMLLP

A0A6J1FBA6 uncharacterized protein LOC1114438816.6e-1756Show/hide
Query:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS
        MAAS ALRSS LRAI RIS G A +NV VS    S RSSFVS R SISPH L                             RLLRRELSSLRPIHSAIAS
Subjt:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS

Query:  ACLVSELPAEASSSIEVFLITMLLP
        ACLVSELPAEAS+S++   +  L P
Subjt:  ACLVSELPAEASSSIEVFLITMLLP

A0A6J1HY48 uncharacterized protein LOC1114685407.3e-1654.4Show/hide
Query:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS
        MAAS ALRSS LRAI RIS   + +NV VS    S RSSFVS R SISPH L                             RLLRRELSSLRPIHSAIAS
Subjt:  MAASAALRSSSLRAICRISIGCATKNVPVS----SFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIAS

Query:  ACLVSELPAEASSSIEVFLITMLLP
        ACLVSELPAEAS+S++   +  L P
Subjt:  ACLVSELPAEASSSIEVFLITMLLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27775.1 FUNCTIONS IN: molecular_function unknown5.7e-0565.62Show/hide
Query:  RLLRRELSSLRPIHSAIASACLVSELPAEASS
        RLLRRELS+ +P HS IA+ACLVS+LP++ +S
Subjt:  RLLRRELSSLRPIHSAIASACLVSELPAEASS

AT2G27775.2 FUNCTIONS IN: molecular_function unknown5.7e-0565.62Show/hide
Query:  RLLRRELSSLRPIHSAIASACLVSELPAEASS
        RLLRRELS+ +P HS IA+ACLVS+LP++ +S
Subjt:  RLLRRELSSLRPIHSAIASACLVSELPAEASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTTCTGCTGCACTCAGATCGTCGAGTCTCCGAGCAATTTGTAGAATATCGATCGGTTGCGCCACCAAAAATGTTCCTGTTTCATCCTTCCGCTCATCTTTCGT
TTCTCCGAGGACTTCAATTTCTCCTCACCCTTTGAGGTTGCTGCTCGCTTCTCTACATTCATCTTCTTGTTTCGATTTTACTTTCATTTGTCTCTGTATTTCATTAGGAT
GCCTTCTTGTTAGGTTGTTGCGGCGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCTGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCTCCTCC
ATAGAAGTATTTTTAATTACTATGTTATTGCCACCTATCAAATTGGTCAACGATCCCGATTGTAGAAAGTTCAAGAGATGCATTTTTCATTTTGATGGGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTTCTGCTGCACTCAGATCGTCGAGTCTCCGAGCAATTTGTAGAATATCGATCGGTTGCGCCACCAAAAATGTTCCTGTTTCATCCTTCCGCTCATCTTTCGT
TTCTCCGAGGACTTCAATTTCTCCTCACCCTTTGAGGTTGCTGCTCGCTTCTCTACATTCATCTTCTTGTTTCGATTTTACTTTCATTTGTCTCTGTATTTCATTAGGAT
GCCTTCTTGTTAGGTTGTTGCGGCGAGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCTGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCTCCTCC
ATAGAAGTATTTTTAATTACTATGTTATTGCCACCTATCAAATTGGTCAACGATCCCGATTGTAGAAAGTTCAAGAGATGCATTTTTCATTTTGATGGGAGGTGA
Protein sequenceShow/hide protein sequence
MAASAALRSSSLRAICRISIGCATKNVPVSSFRSSFVSPRTSISPHPLRLLLASLHSSSCFDFTFICLCISLGCLLVRLLRRELSSLRPIHSAIASACLVSELPAEASSS
IEVFLITMLLPPIKLVNDPDCRKFKRCIFHFDGR