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Sed0019702 (gene) of Chayote v1 genome

Gene IDSed0019702
OrganismSechium edule (Chayote v1)
DescriptionAP complex subunit sigma
Genome locationLG13:20883302..20885223
RNA-Seq ExpressionSed0019702
SyntenySed0019702
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACI66179.1 AP-2 complex subunit sigma-1 [Salmo salar]1.2e-1260.23Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV
        LEDSEKHKVEYE           FTNFVEFRTHKV          AIC  I          ++LFVEILDHFFSNVCELDLVFNFHKV
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV

CAA2993595.1 AP-2 complex subunit sigma [Olea europaea subsp. europaea]9.2e-1355.06Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LE+SEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

KAF9853533.1 hypothetical protein H0E87_005497 [Populus deltoides]1.8e-1359.55Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHKV          A+C  I          ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKVC

KDO84851.1 hypothetical protein CISIN_1g032349mg [Citrus sinensis]3.2e-1356.18Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

OAY50587.1 hypothetical protein MANES_05G147900v8 [Manihot esculenta]3.2e-1356.18Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

TrEMBL top hitse value%identityAlignment
A0A067HB09 AP complex subunit sigma1.5e-1356.18Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

A0A2C9VWA3 AP complex subunit sigma1.5e-1356.18Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

A0A2P2MI94 AP complex subunit sigma2.0e-1355.06Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           FTNFVEFRTHK+                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

B5X5Q9 AP complex subunit sigma5.8e-1360.23Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV
        LEDSEKHKVEYE           FTNFVEFRTHKV          AIC  I          ++LFVEILDHFFSNVCELDLVFNFHKV
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV

K7MP16 AP complex subunit sigma4.4e-1353.93Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC
        LEDSEKHKVEYE           +TNFVEFRTHK+                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKVC
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC

SwissProt top hitse value%identityAlignment
O50016 AP-2 complex subunit sigma3.5e-1559.09Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV
        LEDSEKHKVEYE           FTNFVEFRTHKV          +IC  I          ++LFVEILDHFFSNVCELDLVFNFHKV
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV---------QAICRVI---------FLYLFVEILDHFFSNVCELDLVFNFHKV

Q4ICG5 AP-2 complex subunit sigma7.3e-0542.19Show/hide
Query:  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV
        +NFVEFR +K+                    +  +  ++ FVE+LD FF NVCELDLVFNF+KV
Subjt:  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV

Q54H39 AP-2 complex subunit sigma3.2e-0843.68Show/hide
Query:  EDSEKHKVEYE-----------FTNFVEFRTHKVQ---------AIC-----RVIF----LYLFVEILDHFFSNVCELDLVFNFHKV
        ED EK K+ +E           FTNFVEFRTH++          ++C       +F    ++LFVE+LD +F NVCELDLVFNF+KV
Subjt:  EDSEKHKVEYE-----------FTNFVEFRTHKVQ---------AIC-----RVIF----LYLFVEILDHFFSNVCELDLVFNFHKV

Q7SAQ1 AP-2 complex subunit sigma5.1e-0645.31Show/hide
Query:  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV
        +NFVEFR HKV                    +  +  ++ FVE+LD FF NVCELDLVFNF+KV
Subjt:  TNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV

Q84WL9 AP-2 complex subunit sigma1.3e-1454.55Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV
        LE+SEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKV
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein9.4e-1654.55Show/hide
Query:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV
        LE+SEKHKVEYE           FTNFVEFRTHKV                    +  +  ++LFVEILDHFFSNVCELDLVFNFHKV
Subjt:  LEDSEKHKVEYE-----------FTNFVEFRTHKV------------------QAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKV

AT2G17380.1 associated protein 192.8e-0440.32Show/hide
Query:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHK
        NF+E+R +KV          C  I            ++ +VEILD +F +VCELDL+FNFHK
Subjt:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHK

AT4G35410.1 Clathrin adaptor complex small chain family protein7.5e-0542.86Show/hide
Query:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHKV
        NFVE+R +KV          C  I            ++ +VEILD +F +VCELDL+FNFHKV
Subjt:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHKV

AT4G35410.2 Clathrin adaptor complex small chain family protein2.2e-0441.94Show/hide
Query:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHK
        NFVE+R +KV          C  I            ++ +VEILD +F +VCELDL+FNFHK
Subjt:  NFVEFRTHKV-------QAICRVI-----------FLYLFVEILDHFFSNVCELDLVFNFHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTACGTTCCCTCGAGGATTCAGAGAAGCACAAGGTCGAGTACGAGTTCACCAATTTTGTTGAGTTTCGAACACACAAGGTACAGGCAATATGCAGGGTTATTTT
TCTCTATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATATTACGTTCCCTCGAGGATTCAGAGAAGCACAAGGTCGAGTACGAGTTCACCAATTTTGTTGAGTTTCGAACACACAAGGTACAGGCAATATGCAGGGTTATTTT
TCTCTATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGA
Protein sequenceShow/hide protein sequence
MILRSLEDSEKHKVEYEFTNFVEFRTHKVQAICRVIFLYLFVEILDHFFSNVCELDLVFNFHKVC