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Sed0019732 (gene) of Chayote v1 genome

Gene IDSed0019732
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG09:24216066..24216440
RNA-Seq ExpressionSed0019732
SyntenySed0019732
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037432.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

KAA0039098.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-3465.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q+  SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

KAA0059562.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-3566.13Show/hide
Query:  NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSL
        N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  
Subjt:  NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSL

Query:  LYSKPYTKRIDNLRMPTGYQPPKF
        LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  LYSKPYTKRIDNLRMPTGYQPPKF

TYK03695.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.5e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

TrEMBL top hitse value%identityAlignment
A0A5A7T1V3 Ty3-gypsy retrotransposon protein4.6e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

A0A5A7UUI7 Ty3-gypsy retrotransposon protein4.6e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

A0A5A7VAV4 Retrotransposon gag protein4.6e-3566.13Show/hide
Query:  NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSL
        N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  
Subjt:  NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSL

Query:  LYSKPYTKRIDNLRMPTGYQPPKF
        LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  LYSKPYTKRIDNLRMPTGYQPPKF

A0A5D3BX77 Retrotransposon gag protein4.6e-3565.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

A0A5D3CSH0 Ty3-gypsy retrotransposon protein1.3e-3465.08Show/hide
Query:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS
        + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++MQE+  Q+  SIA+L VQQLQ+MI +SI+ QYGGPAQ+
Subjt:  MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQS

Query:  SLLYSKPYTKRIDNLRMPTGYQPPKF
          LYSKPYTKRIDNLRMP GYQPPKF
Subjt:  SLLYSKPYTKRIDNLRMPTGYQPPKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCACATCTCTAAAAAA
TCAAATGGAAAGCCGAGATGTTGTTGAGTCTAGCCATACCGTCGTCAACAAAGACAAGGGGAAATCCATCATGCAAGAAAATCACTCACAACACAATGCTTCAATTGCTA
CACTGTATGTTCAACAGTTGCAAGATATGATTATGACCTCAATTAGAGCACAATATGGTGGACCTGCTCAGAGCTCTTTGTTATACTCGAAGCCATATACCAAAAGAATC
GATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCACATCTCTAAAAAA
TCAAATGGAAAGCCGAGATGTTGTTGAGTCTAGCCATACCGTCGTCAACAAAGACAAGGGGAAATCCATCATGCAAGAAAATCACTCACAACACAATGCTTCAATTGCTA
CACTGTATGTTCAACAGTTGCAAGATATGATTATGACCTCAATTAGAGCACAATATGGTGGACCTGCTCAGAGCTCTTTGTTATACTCGAAGCCATATACCAAAAGAATC
GATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTTAA
Protein sequenceShow/hide protein sequence
MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESSHTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRI
DNLRMPTGYQPPKF