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Sed0019829 (gene) of Chayote v1 genome

Gene IDSed0019829
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG06:32621976..32623584
RNA-Seq ExpressionSed0019829
SyntenySed0019829
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-3850.51Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSE-QSKDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +A  IW  +     G I ++ENP  D+  S SE  +++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSE-QSKDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]6.4e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +A  IW  +     G I ++ENP  D+  S SE+S ++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

KAA0048375.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]4.6e-3749.49Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL
        MT + N S         P TR+RS+EIQ  E      +A  IW  +       I ++ENP  D+  S S++S + A  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++++RDA ESS TR +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.4e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +   IW  +     G I ++ENP  D+  S SE+S ++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+K+FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS++IQ  E      +A  IW  +     G I ++ENP  D+  S SE+S + A  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI SLK+++E+RDA+ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL++MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein2.0e-3850.51Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSE-QSKDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +A  IW  +     G I ++ENP  D+  S SE  +++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSE-QSKDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

A0A5A7TZU9 Ribonuclease H3.1e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +A  IW  +     G I ++ENP  D+  S SE+S ++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

A0A5A7U5H1 Ty3-gypsy retrotransposon protein4.1e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS+EIQ  E      +   IW  +     G I ++ENP  D+  S SE+S ++V  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQS-KDVATPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+K+FEI  LK+++E+RDA ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.8e-3951.02Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL
        MT + N S   S     P TR+RS++IQ  E      +A  IW  +     G I ++ENP  D+  S SE+S + A  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI SLK+++E+RDA+ESS T  +K   KGK +MQE QPQ+STSIASLSVQQL++MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class2.2e-3749.49Show/hide
Query:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL
        MT + N S         P TR+RS+EIQ  E      +A  IW  +       I ++ENP  D+  S S++S + A  P+IMSVM+ D DTS ++R+AEL
Subjt:  MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVA-TPDIMSVMMADADTSGDERIAEL

Query:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK
        E+KV ML+K VE+++FEI  LK+++++RDA ESS TR +K   KGK +MQE QPQ+STSIASLSVQQL +MI N+I+ QYGGP Q++  YSKP  K
Subjt:  ERKVEMLLKTVEDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACACAAAAAAAACATTTCAACAATTCCAAGCAGCACCTACTTGGGACCTATCACCCGTAATCGCTCCAAAGAAATCCAGCAAATGGAAAAAGAGTCAGCTTCTTT
CCTTGCAGCCAAAATATGGGCTCATTTAGAAGGAAATAAGGGAGGTGAAATTTCTATGCAAGAAAATCCTCTATTTGATCAATCCATCTCATCATCTGAACAATCAAAGG
ATGTAGCCACTCCTGATATTATGTCTGTGATGATGGCTGATGCAGATACGTCAGGCGATGAGAGAATAGCAGAGCTTGAAAGGAAAGTAGAGATGTTGCTGAAAACAGTT
GAGGATAAAGAGTTTGAAATCACTTCTCTGAAGCATTACCTTGAGACTCGGGATGCTGTCGAATCTAGTCAAACGCGTGCTGTAAAGACTAATGAAAAAGGGAAGACTCT
TATGCAAGAAGTTCAACCCCAACACTCAACTTCTATCGCTTCGTTATCCGTCCAACAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGCCTCCTC
AAAGTTATCTCACATATTCCAAACCTTCAAACAAACCACGCTGCTGTAATAAGTCCTTCAAATGTACAATCACTTGTGGGATCCTCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACACACAAAAAAAACATTTCAACAATTCCAAGCAGCACCTACTTGGGACCTATCACCCGTAATCGCTCCAAAGAAATCCAGCAAATGGAAAAAGAGTCAGCTTCTTT
CCTTGCAGCCAAAATATGGGCTCATTTAGAAGGAAATAAGGGAGGTGAAATTTCTATGCAAGAAAATCCTCTATTTGATCAATCCATCTCATCATCTGAACAATCAAAGG
ATGTAGCCACTCCTGATATTATGTCTGTGATGATGGCTGATGCAGATACGTCAGGCGATGAGAGAATAGCAGAGCTTGAAAGGAAAGTAGAGATGTTGCTGAAAACAGTT
GAGGATAAAGAGTTTGAAATCACTTCTCTGAAGCATTACCTTGAGACTCGGGATGCTGTCGAATCTAGTCAAACGCGTGCTGTAAAGACTAATGAAAAAGGGAAGACTCT
TATGCAAGAAGTTCAACCCCAACACTCAACTTCTATCGCTTCGTTATCCGTCCAACAACTTAATGATATGATCACAAACACCATTAGAGCTCAATATGGCGGGCCTCCTC
AAAGTTATCTCACATATTCCAAACCTTCAAACAAACCACGCTGCTGTAATAAGTCCTTCAAATGTACAATCACTTGTGGGATCCTCTCATGA
Protein sequenceShow/hide protein sequence
MTHKKNISTIPSSTYLGPITRNRSKEIQQMEKESASFLAAKIWAHLEGNKGGEISMQENPLFDQSISSSEQSKDVATPDIMSVMMADADTSGDERIAELERKVEMLLKTV
EDKEFEITSLKHYLETRDAVESSQTRAVKTNEKGKTLMQEVQPQHSTSIASLSVQQLNDMITNTIRAQYGGPPQSYLTYSKPSNKPRCCNKSFKCTITCGILS