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Sed0019852 (gene) of Chayote v1 genome

Gene IDSed0019852
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 1-like
Genome locationLG06:8123458..8124032
RNA-Seq ExpressionSed0019852
SyntenySed0019852
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011659718.1 classical arabinogalactan protein 10 [Cucumis sativus]2.3e-0454.13Show/hide
Query:  MASLRITLLALTALFFFTSAAANSPSPSP----YPHPHPPK------VSHKSAPPPTSASASPAVSPPSISS-PPAHAPAPAA--NNAAPCTVAAAGSLF
        MASL ITL+ALTALF  TS  A SP+PSP    +PH H P       +SHKS   P   S SP+ SP + SS PPA+A APA   N+A   T A + SLF
Subjt:  MASLRITLLALTALFFFTSAAANSPSPSP----YPHPHPPK------VSHKSAPPPTSASASPAVSPPSISS-PPAHAPAPAA--NNAAPCTVAAAGSLF

Query:  AAVSAAAFL
         AVSAAAFL
Subjt:  AAVSAAAFL
XP_022141985.1 classical arabinogalactan protein 1-like [Momordica charantia]1.2e-0552.68Show/hide
Query:  MASLRITLLALTALFFFTSAAANSP-----SPSPYPHPHPPKVSHKSAPPPT----------SASASPAVSPPSISSPPAHAPAPAANNAAPCTVAAAGS
        MAS+R T+LAL AL   TSAAA SP     + SP P    P+VS KSAP P           S+S SPA+ P SISSPPA APA A N AA  + A AGS
Subjt:  MASLRITLLALTALFFFTSAAANSP-----SPSPYPHPHPPKVSHKSAPPPT----------SASASPAVSPPSISSPPAHAPAPAANNAAPCTVAAAGS

Query:  LFAAVSAAAFLL
        LF    AAAFL+
Subjt:  LFAAVSAAAFLL
TrEMBL top hitse value%identityAlignment
A0A0A0K7F2 Uncharacterized protein1.1e-0454.13Show/hide
Query:  MASLRITLLALTALFFFTSAAANSPSPSP----YPHPHPPK------VSHKSAPPPTSASASPAVSPPSISS-PPAHAPAPAA--NNAAPCTVAAAGSLF
        MASL ITL+ALTALF  TS  A SP+PSP    +PH H P       +SHKS   P   S SP+ SP + SS PPA+A APA   N+A   T A + SLF
Subjt:  MASLRITLLALTALFFFTSAAANSPSPSP----YPHPHPPK------VSHKSAPPPTSASASPAVSPPSISS-PPAHAPAPAA--NNAAPCTVAAAGSLF

Query:  AAVSAAAFL
         AVSAAAFL
Subjt:  AAVSAAAFL
A0A6J1CJM5 classical arabinogalactan protein 1-like6.0e-0652.68Show/hide
Query:  MASLRITLLALTALFFFTSAAANSP-----SPSPYPHPHPPKVSHKSAPPPT----------SASASPAVSPPSISSPPAHAPAPAANNAAPCTVAAAGS
        MAS+R T+LAL AL   TSAAA SP     + SP P    P+VS KSAP P           S+S SPA+ P SISSPPA APA A N AA  + A AGS
Subjt:  MASLRITLLALTALFFFTSAAANSP-----SPSPYPHPHPPKVSHKSAPPPT----------SASASPAVSPPSISSPPAHAPAPAANNAAPCTVAAAGS

Query:  LFAAVSAAAFLL
        LF    AAAFL+
Subjt:  LFAAVSAAAFLL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCCTGCGAATTACGCTTCTAGCCCTAACGGCGCTGTTCTTCTTCACCTCCGCCGCCGCCAACTCTCCGTCGCCGTCGCCATATCCACATCCACATCCACCCAA
GGTTTCTCACAAATCGGCGCCGCCGCCGACCTCCGCTTCGGCGTCGCCGGCGGTTTCTCCGCCCTCCATCTCCTCCCCTCCCGCCCACGCTCCTGCTCCTGCCGCTAACA
ATGCCGCTCCCTGTACTGTCGCCGCCGCCGGATCTCTCTTCGCCGCCGTCTCCGCCGCTGCTTTCCTCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATCGAATCAATGGCGTCCCTGCGAATTACGCTTCTAGCCCTAACGGCGCTGTTCTTCTTCACCTCCGCCGCCGCCAACTCTCCGTCGCCGTCGCCATATCCACATCCACA
TCCACCCAAGGTTTCTCACAAATCGGCGCCGCCGCCGACCTCCGCTTCGGCGTCGCCGGCGGTTTCTCCGCCCTCCATCTCCTCCCCTCCCGCCCACGCTCCTGCTCCTG
CCGCTAACAATGCCGCTCCCTGTACTGTCGCCGCCGCCGGATCTCTCTTCGCCGCCGTCTCCGCCGCTGCTTTCCTCCTCTAGATGTCTTCTCCGGCGGTTCGATCTCCA
CTTCAGAGAGCTGCTTTTTTTTTTTAATGTGCTAATTACTGTTCTGTCCCCCACATTATAATTATATTTTATGAATTATTGATATGATTATTATGGTCGCTGCTGGTAGT
TTGTATGATCATATGGTATGGTGTGTCTGTCAAACATTTTCATTCCCATTTTCAATACTCTATTTTATTTTCATCTTTATTCTTTTATAATTTAGCATCTATTTAGTTTT
GGTTATATCAACCTGGACAATAAAA
Protein sequenceShow/hide protein sequence
MASLRITLLALTALFFFTSAAANSPSPSPYPHPHPPKVSHKSAPPPTSASASPAVSPPSISSPPAHAPAPAANNAAPCTVAAAGSLFAAVSAAAFLL