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Sed0019874 (gene) of Chayote v1 genome

Gene IDSed0019874
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG11:31912210..31912919
RNA-Seq ExpressionSed0019874
SyntenySed0019874
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-3767.33Show/hide
Query:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP
        M P  SLLFL+ L LISPSS ++AA RRLDD    T  D TVKC+PCE+N PSP       PPPP+YPSPPPPSPPPPDVVIYYS PPPPKK+HK+ +CP
Subjt:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP

Query:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL
        PPP+P F YITGPPG+LYPID  YNAA R+L    ASAV GLA+AGVL++
Subjt:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL

XP_004150475.1 leucine-rich repeat extensin-like protein 6 [Cucumis sativus]1.7e-3868.03Show/hide
Query:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC
        M PLK LLFL+FL LISPSSA  +   RRLDD+  PT+P+  VKCAPCE+N PSPPPP+       +YPSPPPPSPPPPDVV YYSPPPP KKE K P C
Subjt:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC

Query:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVAGLALAGVLLL
        PPPPSP F YITGPPG+LYPID  YNAAGR+ A+ V G+ LAG+LL+
Subjt:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVAGLALAGVLLL

XP_008467156.1 PREDICTED: extensin-like [Cucumis melo]2.8e-3868.92Show/hide
Query:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC
        M PLK LLFL+FL LISPSSA  +A  RRLDD+  PT+P+  VKCAPCE+N PSPPPP+       +YPSPPPPSPPPPDVV YYSPPPP KKE K+P C
Subjt:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC

Query:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVA-GLALAGVLLL
        PPPPSP F YITGPPG+LYPID +YNAAGR+ A+A A G+ LAG+LL+
Subjt:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVA-GLALAGVLLL

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]2.0e-3968Show/hide
Query:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNP-DGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECP
        M P  SLLFL+ L LISPSS ++AA RRLDD+ V   P D TVKC+PCE+N PSP       PPPP+YPSPPPPSPPPPDVV+YYSPPPPKK+HK+ +CP
Subjt:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNP-DGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECP

Query:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL
        PPPSP F YITGPPG+LYPID +YNAA R+L    ASAV GLA+AGVL++
Subjt:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL

XP_023520933.1 extensin [Cucurbita pepo subsp. pepo]8.2e-3869.8Show/hide
Query:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP
        M P  SLLFL+ L LISPSS ++AA RRLDD+  PT+P  TVKC+PCE+N PSPP      PPPP+YPSPPPPSPPPPDVVIYYS PPPPKK+HK+ +CP
Subjt:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP

Query:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLL
        PPPSP F YITGPPG+LYPID +YNAA R+L    ASAV GLA+AGVL+
Subjt:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLL

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein8.0e-3968.03Show/hide
Query:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC
        M PLK LLFL+FL LISPSSA  +   RRLDD+  PT+P+  VKCAPCE+N PSPPPP+       +YPSPPPPSPPPPDVV YYSPPPP KKE K P C
Subjt:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC

Query:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVAGLALAGVLLL
        PPPPSP F YITGPPG+LYPID  YNAAGR+ A+ V G+ LAG+LL+
Subjt:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVAGLALAGVLLL

A0A1S3CT22 extensin-like1.4e-3868.92Show/hide
Query:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC
        M PLK LLFL+FL LISPSSA  +A  RRLDD+  PT+P+  VKCAPCE+N PSPPPP+       +YPSPPPPSPPPPDVV YYSPPPP KKE K+P C
Subjt:  MFPLKSLLFLSFLFLISPSSA-AAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPP-KKEHKDPEC

Query:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVA-GLALAGVLLL
        PPPPSP F YITGPPG+LYPID +YNAAGR+ A+A A G+ LAG+LL+
Subjt:  PPPPSPYFNYITGPPGELYPIDNDYNAAGRKLASAVA-GLALAGVLLL

A0A6J1DDL2 acrosin1.7e-3364.94Show/hide
Query:  MFPLKSLLFLSFLFLISPS--SAAAAAARRLDDS-AVP-TNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDP
        M PLKSLLFL+ L LISPS  +AA+AAAR LD++ AVP T  D TVKCAPC++N PSP       PPPPIYPSPPPPSPPPPDV+ YYSPPPPKK   + 
Subjt:  MFPLKSLLFLSFLFLISPS--SAAAAAARRLDDS-AVP-TNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDP

Query:  ECPPPP-SPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL
         CPPPP  P F YITGPPG+LYPID DYNAA R L    A+AV GL L G+ ++
Subjt:  ECPPPP-SPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL

A0A6J1GMY1 extensin3.4e-3767.33Show/hide
Query:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP
        M P  SLLFL+ L LISPSS ++AA RRLDD    T  D TVKC+PCE+N PSP       PPPP+YPSPPPPSPPPPDVVIYYS PPPPKK+HK+ +CP
Subjt:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYS-PPPPKKEHKDPECP

Query:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL
        PPP+P F YITGPPG+LYPID  YNAA R+L    ASAV GLA+AGVL++
Subjt:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL

A0A6J1JNW0 leucine-rich repeat extensin-like protein 39.5e-4068Show/hide
Query:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNP-DGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECP
        M P  SLLFL+ L LISPSS ++AA RRLDD+ V   P D TVKC+PCE+N PSP       PPPP+YPSPPPPSPPPPDVV+YYSPPPPKK+HK+ +CP
Subjt:  MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNP-DGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECP

Query:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL
        PPPSP F YITGPPG+LYPID +YNAA R+L    ASAV GLA+AGVL++
Subjt:  PPPSPYFNYITGPPGELYPIDNDYNAAGRKL----ASAVAGLALAGVLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein8.0e-0746.09Show/hide
Query:  SAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPP-IYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYI-TGPPGELYPIDNDYNAAGRK
        +A  ++ +  V C PC +N P PP    PSPPPP   PSPPPPSPPPP      S  PP      P  PPPP P  NY+ T PPG+LYPI+N Y AA   
Subjt:  SAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPP-IYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYI-TGPPGELYPIDNDYNAAGRK

Query:  LASAVAGLALAGVLL
         + +V  L + GV++
Subjt:  LASAVAGLALAGVLL

AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.0e-0946.15Show/hide
Query:  SPSSAAAAAARRLDDSAVPTNPDGTVKCAP-CEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYITGPPGE
        S SS A+  AR+LD+     +P   +KC+P C +N    PPP  PSPPP   PSPPPP+ PPP  +    PPPPKK      CPPPP   F YITGPPG 
Subjt:  SPSSAAAAAARRLDDSAVPTNPDGTVKCAP-CEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYITGPPGE

Query:  LYPIDNDYNAAGRK--LASAVAGLALAGVL
        LYP+D  + AA  K  +   ++GL   G++
Subjt:  LYPIDNDYNAAGRK--LASAVAGLALAGVL

AT1G70990.1 proline-rich family protein9.2e-1142.25Show/hide
Query:  LKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPS
        L +++FL+F  +I+ S   ++  R+L++          +KC PC +N P P PP  PSPPPP    PPPP P          P PPKK +    CPPPPS
Subjt:  LKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPS

Query:  PYFNYITGPPGELYPIDNDYNAAGRKLASAV--AGLALAGVL
         Y  Y+TGPPGELYPID  + AA  K  + V  +GL   GV+
Subjt:  PYFNYITGPPGELYPIDNDYNAAGRKLASAV--AGLALAGVL

AT3G22800.1 Leucine-rich repeat (LRR) family protein9.8e-0546.84Show/hide
Query:  VKCAP--CEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYITGPPGELYP
        + CA   C   +P PPPP  P PPPP  P PPPP PPPP   +Y SPPPP         PPPP PY       P  +YP
Subjt:  VKCAP--CEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYITGPPGELYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCTCTCAAATCTCTCCTCTTCCTCAGCTTCCTGTTTCTAATTTCCCCCTCCTCCGCCGCGGCCGCCGCCGCTCGCCGCCTCGACGACTCCGCCGTCCCGACCAA
CCCCGACGGAACCGTCAAGTGCGCCCCATGCGAAGAAAATACCCCATCTCCGCCGCCGCCGATCTACCCCTCTCCGCCTCCGCCGATCTACCCCTCGCCGCCACCGCCGT
CTCCTCCGCCGCCGGACGTCGTGATCTATTACTCTCCTCCACCCCCCAAGAAAGAGCACAAGGACCCCGAGTGCCCGCCGCCGCCGTCGCCGTACTTCAATTACATAACC
GGCCCTCCCGGCGAGCTGTATCCGATCGACAATGATTACAACGCCGCCGGCCGGAAACTCGCCTCCGCCGTGGCTGGGTTGGCTCTGGCCGGAGTTCTGCTTCTTTAG
mRNA sequenceShow/hide mRNA sequence
TAGCTGGGAATCCAAACACTCCCCTTTCTCTCTCTCTCTCTCTAAAAATCTTCAAAGTTTCATACATTTTTCATGTTCTCCAAATTTCCCACTTTCTAAAAAAAATGTTT
CCTCTCAAATCTCTCCTCTTCCTCAGCTTCCTGTTTCTAATTTCCCCCTCCTCCGCCGCGGCCGCCGCCGCTCGCCGCCTCGACGACTCCGCCGTCCCGACCAACCCCGA
CGGAACCGTCAAGTGCGCCCCATGCGAAGAAAATACCCCATCTCCGCCGCCGCCGATCTACCCCTCTCCGCCTCCGCCGATCTACCCCTCGCCGCCACCGCCGTCTCCTC
CGCCGCCGGACGTCGTGATCTATTACTCTCCTCCACCCCCCAAGAAAGAGCACAAGGACCCCGAGTGCCCGCCGCCGCCGTCGCCGTACTTCAATTACATAACCGGCCCT
CCCGGCGAGCTGTATCCGATCGACAATGATTACAACGCCGCCGGCCGGAAACTCGCCTCCGCCGTGGCTGGGTTGGCTCTGGCCGGAGTTCTGCTTCTTTAGAAAGTGGC
TCTGAAGGTAAAGTTAATAATGGTTTTGAATTTTAATGGATCATTGTGTTATCTAATAATTTTGTAATTTGTACTCAATATTGAATTGTCCAGAAATTTGTGATCATAAA
AGAAAATTTATGTGTTTCTTTTAACATATTTTCGATTTTTTTTTTCCTCC
Protein sequenceShow/hide protein sequence
MFPLKSLLFLSFLFLISPSSAAAAAARRLDDSAVPTNPDGTVKCAPCEENTPSPPPPIYPSPPPPIYPSPPPPSPPPPDVVIYYSPPPPKKEHKDPECPPPPSPYFNYIT
GPPGELYPIDNDYNAAGRKLASAVAGLALAGVLLL