CuGenDBv2

Gene ID	Sed0019890
Organism	Sechium edule (Chayote v1)
Description	DNA mismatch repair protein
Genome location	LG11:836729..847320
RNA-Seq Expression	Sed0019890
Synteny	Sed0019890
Gene Ontology terms	GO:0000710 - meiotic mismatch repair (biological process) GO:0006290 - pyrimidine dimer repair (biological process) GO:0036297 - interstrand cross-link repair (biological process) GO:0043570 - maintenance of DNA repeat elements (biological process) GO:0045910 - negative regulation of DNA recombination (biological process) GO:0032301 - MutSalpha complex (cellular component) GO:0000400 - four-way junction DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function) GO:0032143 - single thymine insertion binding (molecular function) GO:0032357 - oxidized purine DNA binding (molecular function) GO:0032405 - MutLalpha complex binding (molecular function)
InterPro domains	IPR005172 - CRC domain IPR033467 - Tesmin/TSO1-like CXC domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6599446.1 DNA mismatch repair protein MSH7, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

KAG6599446.1 DNA mismatch repair protein MSH7, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-07

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

KAG7030424.1 DNA mismatch repair protein MSH7, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

KAG7030424.1 DNA mismatch repair protein MSH7, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-07

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

XP_022946546.1 DNA mismatch repair protein MSH7-like [Cucurbita moschata]

6.3e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

XP_022999426.1 DNA mismatch repair protein MSH7 [Cucurbita maxima]

1.8e-07

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

XP_022999426.1 DNA mismatch repair protein MSH7 [Cucurbita maxima]

6.3e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

XP_022999426.1 DNA mismatch repair protein MSH7 [Cucurbita maxima]

1.8e-07

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

XP_023547322.1 DNA mismatch repair protein MSH7-like [Cucurbita pepo subsp. pepo]

6.3e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

XP_023547322.1 DNA mismatch repair protein MSH7-like [Cucurbita pepo subsp. pepo]

1.8e-07

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V751 DNA mismatch repair protein MSH7

3.0e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS A+RLSILI+LFVEKATEWS+V+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

A0A5D3CFZ1 DNA mismatch repair protein MSH7

3.0e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS A+RLSILI+LFVEKATEWS+V+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

A0A5D3CFZ1 DNA mismatch repair protein MSH7

1.6e-06

81.58

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE
        KV R+EQLES+DQTK+RGANSVIPRKLVQV TPSTK +
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE

A0A6J1DYJ9 DNA mismatch repair protein

8.0e-06

82.35

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEWSEV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

A0A6J1DYJ9 DNA mismatch repair protein

1.6e-06

81.58

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE
        KV R+EQLES+DQTK+RGANSVIPRKLVQV TPSTK +
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE

A0A6J1G406 DNA mismatch repair protein

8.6e-08

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

A0A6J1G406 DNA mismatch repair protein

3.0e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

A0A6J1G406 DNA mismatch repair protein

8.6e-08

94.44

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV RIEQLESSDQTKTRGANSVIPRKLVQV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

A0A6J1KCZ8 DNA mismatch repair protein

3.0e-05

79.41

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + DS+A+RLSILI+LFVEKATEW EV+HALNCID
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

A0A6J1KCZ8 DNA mismatch repair protein

1.5e-07

88.89

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK
        KV R+EQLESSDQTKTRGANSVIPRKL+QV+TPSTK
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTK

SwissProt top hits

e value

%identity

Alignment

Q9SMV7 DNA mismatch repair protein MSH7

3.7e-08

76.32

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE
        KV RIEQLE+SDQ K RGAN++IPRKLVQV+TPST  E
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE

Q9SMV7 DNA mismatch repair protein MSH7

3.8e-05

55.88

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + D NA+ L+ILI+LF+E+AT+WSEV+H ++C+D
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

Arabidopsis top hits

e value

%identity

Alignment

AT3G24495.1 MUTS homolog 7

2.6e-09

76.32

Show/hide

Query:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE
        KV RIEQLE+SDQ K RGAN++IPRKLVQV+TPST  E
Subjt:  KVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEE

AT3G24495.1 MUTS homolog 7

2.7e-06

55.88

Show/hide

Query:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID
        + D NA+ L+ILI+LF+E+AT+WSEV+H ++C+D
Subjt:  MVDSNAKRLSILIKLFVEKATEWSEVLHALNCID

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGCGGAAAAATCTTGCGAGGCGGCGATCGGAGTGGAGAAATGTTGTGTGGCGGCGAACGAAGCGGAGAAATGTTGTGCAGCGGCGATCGAAGCCGAGAAATGTTG
CGCAGCGGCGATCGAAGCCGAGAAATGTTGCACGGCGGCGTTCGGAGCAGAGAAATGTTGCTCGGCGGCGATCGAAGCGGAGAAGAACGCCGAGAAGAGTTGCTGCACTG
AAAACTCTGAAATGGTTCCCATCGAAGCAGCATCTGCAATCGAACTCAAGAAGAATGGCAAGCACTGTTGCGACTCTGAAAAGCTTCCCGCAGCAGCGATGGAAGCCACG
AAGAAGTCTTCCGAGGAGTCCGATGATGCTACTGAAACTCCCCGTGGCTACTGCGTCCGATGTGAGAAAGGGTGCCGGCAGCGCTACTGCCCATGCTTTAAGGATGGGAG
GCCTTGCAATCATAGGTGTACCTGCGTCAATTGTGAAAATCATCCAAGGGGTCCTCCACGTCAAGAGTTTGCTATCTTCAGTGGATTCTCAAGTCTTTTGGTTGATGAAA
CTAGGTTTCTGCTATACAGTTTTATGGAATTTGACAACTTTGTATGGAGGTGTTGGACTGGTTCTATCGAAGATGATGCTTCCTGTGCTGCTGCTCTGGGCGCTCTCTTG
ATGCAAATTTGTAAGAAATCTGATGCCAAAGGATTGATGATGCTGTTCAAAAGCTTGTTGCTCGTGGATAAGGATGTTGAGATTTCTGTCGTTTTGTTCATCATATGTAA
AGTTGATCGAATCGAGCAGTTGGAATCTTCGGATCAAACAAAAACCCGAGGTGCAAATTCTGTGATACCTAGGAAATTAGTACAGGTTATCACTCCATCAACCAAGGAAG
AAGAATTGGAATTGATGCTGTTCATTTGCTTGCCATCAAAGAGAACCATGATGGTGGATTCTAATGCTAAAAGGCTCTCTATTCTGATCAAGTTATTTGTAGAGAAAGCC
ACTGAATGGTCTGAAGTACTTCATGCCCTCAATTGCATTGATTTTTTCATCATTCCATTGCAGAAATCGTGTCTCGAGAGTAATGTCGATGCCCCAGATACTTTCAACAA
TGAATTCCGAGATTATGGCCATAGACAGAAGTAG

mRNA sequence

Show/hide mRNA sequence

CTTCCCTTCAAAAAACAAAATGTTGAGAACAAAACCTTCAAATCCTCTCCAATGGAGGCGCCTCTCTCCTCCTCCTCTTCCTCCCTCACCTTCTCCACTCCTCTAATGGC
GACGTCGGCACCGCCTTACATATTCCCCGCCGTATTCTCAGAAGAATTCCAAAATCAATTTTAGAATTTCGGTTTCGAATTTAGGGTTTTGAGATTTGTTTGTTTGGTAT
TAGATACTGTGTCATTCAATATGGAATCTTGAAATTTATTGATTCTGATATCATATTAAATAGTATGAACATTAATCTCAAAATTAATCGAAAACGAGAGAGGAATGAGT
TGTCAACATTTTTTTATATGACTCACTCTTTCAATATCCTAAGATTTTTTTTTTTATTTTTATTGTTTAAGAGTGTGACATTCGATGTGAGATCCTAAGATGGTACTTCT
TTTAGTCGAATATCGACTTAGATTTACTATTTCTATAATATATTAGACAATGTCCAATTGATTAACGAGAGAAAAAAAAAGTAGTCTACTTTTCTTATATATTGCCGAGA
AATATCCCTCTCAGCCTCCGTTTGTTGCAGCGACAGCCTGTTTGGGCGACAATTTGAGCGAGTTCCCGACGAGCAATTTGTTTGCGGCGGCGGGAGATGGGATATGGGAG
AACGGGGCGGCGTGCGGGAGGCAGTGTATTACGTAAGGTGTTTCAGTGCGTCGGAGCCGGAGGCGTGCGTGCCGGATCAGACGGTTCAGATCACCATTGTTGATTATGCT
TTGCAGACGGAACCACCATGGCTTTGTCCACCAACGCGTTTAATGCCATTGTTAATACCTCCGTTTCTGTTGCCCAAGTTACCGTTGAATTTCAACAGGTATAAATTGTA
CAGATTTGAAGATGTTGAATTTGATTCAATAGGAAACAAGAACCCACCAAGATTTCGCGGGTAATCTTCCGATTTCCTCCGAGACCGAAGCCGAGAAATCTTGTGCGGCG
GCGATCGGAGCGGAGGAATGTTACGCGGCGGCGATCGAAGTGGAGAAATGTTGCGCGGCGGCGATCGGAGCGGAGAAATGTTGCGCAGCAGCGATGGAAGCGGAAAAATC
TTGCGAGGCGGCGATCGGAGTGGAGAAATGTTGTGTGGCGGCGAACGAAGCGGAGAAATGTTGTGCAGCGGCGATCGAAGCCGAGAAATGTTGCGCAGCGGCGATCGAAG
CCGAGAAATGTTGCACGGCGGCGTTCGGAGCAGAGAAATGTTGCTCGGCGGCGATCGAAGCGGAGAAGAACGCCGAGAAGAGTTGCTGCACTGAAAACTCTGAAATGGTT
CCCATCGAAGCAGCATCTGCAATCGAACTCAAGAAGAATGGCAAGCACTGTTGCGACTCTGAAAAGCTTCCCGCAGCAGCGATGGAAGCCACGAAGAAGTCTTCCGAGGA
GTCCGATGATGCTACTGAAACTCCCCGTGGCTACTGCGTCCGATGTGAGAAAGGGTGCCGGCAGCGCTACTGCCCATGCTTTAAGGATGGGAGGCCTTGCAATCATAGGT
GTACCTGCGTCAATTGTGAAAATCATCCAAGGGGTCCTCCACGTCAAGAGTTTGCTATCTTCAGTGGATTCTCAAGTCTTTTGGTTGATGAAACTAGGTTTCTGCTATAC
AGTTTTATGGAATTTGACAACTTTGTATGGAGGTGTTGGACTGGTTCTATCGAAGATGATGCTTCCTGTGCTGCTGCTCTGGGCGCTCTCTTGATGCAAATTTGTAAGAA
ATCTGATGCCAAAGGATTGATGATGCTGTTCAAAAGCTTGTTGCTCGTGGATAAGGATGTTGAGATTTCTGTCGTTTTGTTCATCATATGTAAAGTTGATCGAATCGAGC
AGTTGGAATCTTCGGATCAAACAAAAACCCGAGGTGCAAATTCTGTGATACCTAGGAAATTAGTACAGGTTATCACTCCATCAACCAAGGAAGAAGAATTGGAATTGATG
CTGTTCATTTGCTTGCCATCAAAGAGAACCATGATGGTGGATTCTAATGCTAAAAGGCTCTCTATTCTGATCAAGTTATTTGTAGAGAAAGCCACTGAATGGTCTGAAGT
ACTTCATGCCCTCAATTGCATTGATTTTTTCATCATTCCATTGCAGAAATCGTGTCTCGAGAGTAATGTCGATGCCCCAGATACTTTCAACAATGAATTCCGAGATTATG
GCCATAGACAGAAGTAG

Protein sequence

Show/hide protein sequence

MEAEKSCEAAIGVEKCCVAANEAEKCCAAAIEAEKCCAAAIEAEKCCTAAFGAEKCCSAAIEAEKNAEKSCCTENSEMVPIEAASAIELKKNGKHCCDSEKLPAAAMEAT
KKSSEESDDATETPRGYCVRCEKGCRQRYCPCFKDGRPCNHRCTCVNCENHPRGPPRQEFAIFSGFSSLLVDETRFLLYSFMEFDNFVWRCWTGSIEDDASCAAALGALL
MQICKKSDAKGLMMLFKSLLLVDKDVEISVVLFIICKVDRIEQLESSDQTKTRGANSVIPRKLVQVITPSTKEEELELMLFICLPSKRTMMVDSNAKRLSILIKLFVEKA
TEWSEVLHALNCIDFFIIPLQKSCLESNVDAPDTFNNEFRDYGHRQK

Sed0019890 (gene) of Chayote v1 genome