; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0019904 (gene) of Chayote v1 genome

Gene IDSed0019904
OrganismSechium edule (Chayote v1)
DescriptionRNA polymerase II elongation factor ELL3 isoform 1
Genome locationLG03:8692120..8692945
RNA-Seq ExpressionSed0019904
SyntenySed0019904
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-9280.56Show/hide
Query:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        ETKDS  + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
Subjt:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC
        N C KWWVP V + ATSGVF++ VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVEIKWG LTWLSRNFV I L C
Subjt:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC

Query:  FSGLVFAASKFILCGV
        FSG+VF ASKFILCG+
Subjt:  FSGLVFAASKFILCGV

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]1.7e-9280.09Show/hide
Query:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD
        MA+TKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSD
Subjt:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD

Query:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA
        P  C+KWWVPAV + ATSGVF++ VQLKLW++WKA  +LQRE+SE+RALTRC QELRMKGSCFNL KEP +GNRMKSSSVEIKWG LTW SRNF+AISL 
Subjt:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA

Query:  CFSGLVFAASKFILCG
         FS +VFAASKFILCG
Subjt:  CFSGLVFAASKFILCG

XP_022965180.1 uncharacterized protein LOC111465114 [Cucurbita maxima]8.7e-9281.02Show/hide
Query:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        ETKDS  +THIVEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
Subjt:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC
        N C KWWVP V + ATSGVF++ VQLKLWL+WKA+ +LQRE+SE+RALTR VQELRMKGSCFNL KEP +G+RMKSSSVEIKWG LTWLSRNFV I L C
Subjt:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC

Query:  FSGLVFAASKFILCGV
        FSG+VF ASKFILCG+
Subjt:  FSGLVFAASKFILCGV

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]1.5e-9179.53Show/hide
Query:  ETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
        ET+DS + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN
Subjt:  ETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPN

Query:  ACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACF
         C KWWVP V + ATSGVF++ VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVEIKWG LTWLSRNFV I L CF
Subjt:  ACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACF

Query:  SGLVFAASKFILCGV
        SG+VF ASKFILCG+
Subjt:  SGLVFAASKFILCGV

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]1.3e-9280.56Show/hide
Query:  MAETKDSSTHIVEIPLEQ--NEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS
        MAETKDS  HIVEIP+EQ  + QNQ   IS IQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSS
Subjt:  MAETKDSSTHIVEIPLEQ--NEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS

Query:  DPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISL
        DPN C+KWWVPAV + ATSGVF++ VQLKLWL+WKA+ +LQRE++E+RALTRCVQELRMKGSCFNL KEP +GNRMKSSSVEIKWG LTW SRNF+ I L
Subjt:  DPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISL

Query:  ACFSGLVFAASKFILC
          FS +VFAASKFILC
Subjt:  ACFSGLVFAASKFILC

TrEMBL top hitse value%identityAlignment
A0A0A0L2U7 Uncharacterized protein2.1e-9178.24Show/hide
Query:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD
        MAETKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSD
Subjt:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD

Query:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA
        P  C+KWWVPAV + ATSGVF++ VQLKLW++WKA  +LQ+E++E+RALTRCVQELRMKGSCFNL KEP +GNRMKSSSVEIKWG LTW SRNF+ ISL 
Subjt:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA

Query:  CFSGLVFAASKFILCG
         FS ++F  SKFILCG
Subjt:  CFSGLVFAASKFILCG

A0A1S3BL81 uncharacterized protein LOC1034910498.4e-9380.09Show/hide
Query:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD
        MA+TKDS + HIVEIP+EQ    Q L IS IQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSD
Subjt:  MAETKDS-STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSD

Query:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA
        P  C+KWWVPAV + ATSGVF++ VQLKLW++WKA  +LQRE+SE+RALTRC QELRMKGSCFNL KEP +GNRMKSSSVEIKWG LTW SRNF+AISL 
Subjt:  PNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLA

Query:  CFSGLVFAASKFILCG
         FS +VFAASKFILCG
Subjt:  CFSGLVFAASKFILCG

A0A5N6RKR8 Uncharacterized protein1.0e-6659.03Show/hide
Query:  MAETKDSSTHIVEIPLEQNEQNQML----TIS-AIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF
        MAE KD+  HIVEIP+++ +Q+++L    TIS AIQ HPL +ISES GHLLLLKLWQR+E LFG RI  +ET+L+S+K+++FQLCC+FF+FH   LT+LF
Subjt:  MAETKDSSTHIVEIPLEQNEQNQML----TIS-AIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF

Query:  TSS-------DPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTW
         SS         + C+KWW+P +   +TS V +  VQ+KLW  WK  ++LQRER++SRA+TRC+QELRMKG+ F+L KEPH G RMKSSSVEIKW  LTW
Subjt:  TSS-------DPNACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTW

Query:  LSRNFVAISLACFSGLVFAASKFILCG
         S+  + I+L CF+GLVF ASKFILCG
Subjt:  LSRNFVAISLACFSGLVFAASKFILCG

A0A6J1EWB5 uncharacterized protein LOC1114387096.1e-9180.09Show/hide
Query:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        ETKDS  + H+VEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
Subjt:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC
        N C KWWVP V + ATSGVF++ VQLKLWL+WKA+ +LQRE+SE+RALTRCVQELRMKGSCFNL KEP +G+RMKSSSVEIKWG LT LSRNFV I L C
Subjt:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC

Query:  FSGLVFAASKFILCGV
        FSG+VF ASKFILCG+
Subjt:  FSGLVFAASKFILCGV

A0A6J1HN07 uncharacterized protein LOC1114651144.2e-9281.02Show/hide
Query:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
        ETKDS  +THIVEIP E    NQ + IS I+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP
Subjt:  ETKDS--STHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDP

Query:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC
        N C KWWVP V + ATSGVF++ VQLKLWL+WKA+ +LQRE+SE+RALTR VQELRMKGSCFNL KEP +G+RMKSSSVEIKWG LTWLSRNFV I L C
Subjt:  NACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLAC

Query:  FSGLVFAASKFILCGV
        FSG+VF ASKFILCG+
Subjt:  FSGLVFAASKFILCGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G12870.1 unknown protein8.0e-2735.9Show/hide
Query:  ISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWVPAVPVAATSGV
        + A  +HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LLF       +S+  +AC++ W+P++    +S  
Subjt:  ISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWVPAVPVAATSGV

Query:  FLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILC
         + AV+ K  +     + L+RE+ +++ L +CV+EL+ KG  F+L KE     R KS  VE K  +  W +R+FV +     S LV A  + ILC
Subjt:  FLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILC

AT5G56120.1 unknown protein1.6e-5951.9Show/hide
Query:  MAETKDSSTHIVEIPL-----EQNEQNQMLTIS--------AIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFH
        MA TKDS  H+VEIP+     E+ +Q Q++ +S         IQQHPL +ISES GHLLLLKLWQR+E LF  R+  +E++LES+K++IFQLCC+F +FH
Subjt:  MAETKDSSTHIVEIPL-----EQNEQNQMLTIS--------AIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFH

Query:  ALSLTLLFTSSDPN---------ACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSS
            TL+++SS  +          C+KWW+P+    ATS V +  VQ KL++ WK  R + RER+++R LTRCV ELRMKGS F+L KEP  G RMKSSS
Subjt:  ALSLTLLFTSSDPN---------ACRKWWVPAVPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSS

Query:  VEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG
        VEIKW  +TW S+  + I L C +GL F  SKFILCG
Subjt:  VEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAACCAAGGATTCAAGCACCCACATAGTCGAAATCCCATTAGAACAAAATGAGCAAAACCAAATGCTTACGATCTCTGCAATCCAACAACACCCACTGCGGCA
AATCTCCGAAAGCTCGGGCCATCTATTGCTGTTGAAACTCTGGCAGCGCGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTAAAGC
AACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCCCTCACCCTCTTGTTCACTTCCTCCGATCCCAACGCTTGCCGCAAATGGTGGGTTCCCGCG
GTGCCGGTGGCCGCAACGTCGGGCGTGTTCCTGATGGCGGTGCAGCTGAAGCTGTGGCTGCATTGGAAGGCGGCACGGCGGCTGCAGAGGGAGCGGAGCGAGAGCCGAGC
GCTTACGAGATGCGTTCAAGAGCTGAGAATGAAAGGGTCTTGTTTTAATTTGGGTAAAGAGCCTCATGTTGGGAACAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGG
GGCTTCTCACTTGGCTTTCTAGGAATTTTGTTGCTATTTCTCTTGCTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCAAAGTTCATTCTTTGTGGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
GCCAAAAAGAGAAAAAAACATCCTTTAACAAAATCAATCCCCATTTTCATTCTCCACTCCAACGAAATCCCATTTTCTCATGGCAGAAACCAAGGATTCAAGCACCCACA
TAGTCGAAATCCCATTAGAACAAAATGAGCAAAACCAAATGCTTACGATCTCTGCAATCCAACAACACCCACTGCGGCAAATCTCCGAAAGCTCGGGCCATCTATTGCTG
TTGAAACTCTGGCAGCGCGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGGAGTCTCTAAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTT
CCTCTTCCACGCCCTCTCCCTCACCCTCTTGTTCACTTCCTCCGATCCCAACGCTTGCCGCAAATGGTGGGTTCCCGCGGTGCCGGTGGCCGCAACGTCGGGCGTGTTCC
TGATGGCGGTGCAGCTGAAGCTGTGGCTGCATTGGAAGGCGGCACGGCGGCTGCAGAGGGAGCGGAGCGAGAGCCGAGCGCTTACGAGATGCGTTCAAGAGCTGAGAATG
AAAGGGTCTTGTTTTAATTTGGGTAAAGAGCCTCATGTTGGGAACAGGATGAAGAGCTCTAGTGTGGAGATTAAATGGGGGCTTCTCACTTGGCTTTCTAGGAATTTTGT
TGCTATTTCTCTTGCTTGCTTTTCAGGGCTTGTTTTTGCTGCTTCAAAGTTCATTCTTTGTGGGGTTTGAAGTGTTGTACGTAATTTTTGTCAATTTGGAAACTTATTGT
CTAAATGGATCCAATTTAGAAGGAAATGTCAAAATGGGTTGTGATCAGCCTAATTT
Protein sequenceShow/hide protein sequence
MAETKDSSTHIVEIPLEQNEQNQMLTISAIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKWWVPA
VPVAATSGVFLMAVQLKLWLHWKAARRLQRERSESRALTRCVQELRMKGSCFNLGKEPHVGNRMKSSSVEIKWGLLTWLSRNFVAISLACFSGLVFAASKFILCGV